PDBsum entry 3abk

Tunnel analysis for: 3abk calculated with

MOLE 2.0

PDB id

3abk

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

13 tunnels, coloured by tunnel radius

13 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.25

2.69

64.3

0.65

0.37

9.0

79

6

1

1

15

5

2

0

HEA 516 N PSC 1229 R

2

1.27

2.90

72.8

1.11

0.69

7.0

77

5

1

1

19

10

1

0

HEA 515 N HEA 516 N TGL 1522 Y

3

1.32

2.74

46.5

-0.69

-0.20

6.7

79

2

2

5

8

3

4

0

4

1.49

2.31

48.1

-1.06

-0.16

10.6

75

4

3

4

5

7

2

0

FME 1 O

5

1.43

1.48

58.3

-0.86

-0.16

8.1

77

5

1

4

6

6

2

0

FME 1 O

6

1.29

1.29

15.9

-1.31

0.03

7.5

78

2

0

1

0

2

1

0

FME 1 N

7

1.25

1.25

19.0

-1.89

0.07

18.1

79

2

1

1

0

2

1

0

8

1.14

1.17

21.3

-2.33

-0.40

27.8

90

7

3

3

2

0

0

0

9

1.67

1.71

15.6

-1.21

-0.03

13.3

76

0

2

1

2

2

0

0

10

1.41

1.50

17.3

-0.81

-0.10

13.4

67

0

2

1

3

2

0

0

11

1.60

3.05

19.7

0.07

0.43

5.9

75

0

2

3

3

3

0

0

12

1.24

1.25

16.3

-1.85

-0.02

23.2

71

5

1

0

2

1

1

0

13

1.22

1.22

21.3

-1.70

-0.23

24.4

78

3

3

1

4

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.