PDBsum entry 3a6d Go to PDB code:  Tunnel analysis for: 3a6d calculated with MOLE 2.0 PDB id 3a6d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.15 36.5 -1.43 0.02 17.0 66 2 4 1 2 6 0 0  MGX 307 F 2 1.13 1.30 37.1 -1.46 0.01 15.3 63 2 4 1 1 6 1 0  MGX 307 F 3 1.16 1.14 37.9 -1.59 -0.19 18.8 75 2 4 1 2 3 0 0  MGX 307 F 4 1.15 1.29 38.4 -1.55 -0.18 16.1 72 2 4 1 1 3 1 0  MGX 307 F 5 1.19 1.24 49.5 -1.10 -0.14 14.9 79 4 5 5 4 4 0 0  MGX 307 F 6 1.17 1.24 50.1 -1.12 -0.11 13.2 77 4 5 5 3 4 1 0  MGX 307 F 7 1.22 1.24 18.4 -0.45 -0.21 7.1 69 0 2 2 3 3 2 0  SO4 411 B 8 1.22 1.25 18.9 -0.68 -0.31 8.3 69 0 2 2 3 3 2 0  SO4 413 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.