PDBsum entry 3a5t Go to PDB code:  Tunnel analysis for: 3a5t calculated with MOLE 2.0 PDB id 3a5t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 15.2 -2.57 -0.85 3.4 94 0 0 2 0 0 0 0  DT 5 C DT 9 D DC 10 D DA 11 D 2 1.24 1.42 19.7 0.07 -0.15 10.3 82 1 0 1 1 0 0 1  DT 5 C DG 6 C DC 8 D DC 10 D 3 1.39 1.40 19.8 -1.05 -0.20 22.0 81 3 0 0 2 0 0 1  DG 8 C DT 9 C DC 10 C DT 5 D DG 6 D DA 7 D 4 1.39 1.39 20.1 -1.17 -0.14 24.9 80 4 0 0 2 0 0 1  DG 6 C DA 7 C DG 8 C DT 9 C DC 10 C DT 5 D DG 6 D DA 7 D 5 1.26 1.46 21.2 -1.35 -0.31 22.2 85 2 0 1 2 0 0 1  DT 5 C DG 6 C DG 6 D DA 7 D DC 8 D DC 10 D 6 1.24 1.43 21.3 -1.19 -0.16 23.9 83 4 0 1 2 0 0 1  DT 5 C DG 6 C DA 7 C DC 8 D DC 10 D 7 1.13 1.20 37.6 -0.86 -0.18 18.2 80 3 0 2 2 0 0 2  DT 5 C DG 6 C DA 7 C DG 8 C DT 9 C DC 10 C DT 5 D DG 6 D DA 7 D DC 8 D DT 9 D DC 10 D DA 11 D 8 1.28 1.41 28.3 -1.13 -0.41 18.4 77 4 1 0 2 1 0 0  MSE 32 B DG 1 D DT 2 D 9 1.21 1.41 18.8 -0.09 0.09 19.0 69 3 0 0 4 0 0 0  DT 2 C DG 3 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.