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PDBsum entry 3a0h

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3a0h calculated with MOLE 2.0 PDB id
3a0h
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.06 1.04 166.2 0.52 0.28 9.8 80 15 8 13 37 16 9 0  CLA 6026 c CLA 6028 c CLA 6033 c CLA 6035 c DGD
6056 c DGD 6057 c IOD 6064 d CLA 6034 k BCR 6051
k BCR 6052 k
2 1.32 1.32 15.4 -0.20 -0.33 4.5 78 2 0 1 3 1 0 0  
3 1.30 1.30 16.7 -1.22 -0.65 19.4 83 1 5 0 5 0 4 0  
4 1.20 1.35 18.2 -0.69 -0.40 19.5 80 2 1 0 6 0 2 0  
5 1.17 1.33 26.0 -1.29 -0.41 25.2 83 2 3 0 6 0 2 0  
6 1.20 1.35 18.2 -0.69 -0.40 19.5 80 2 1 0 3 0 0 0  
7 1.17 1.33 26.0 -1.29 -0.41 25.2 83 2 2 0 3 0 0 0  
8 1.14 2.01 17.8 0.53 -0.04 2.9 88 2 0 1 8 2 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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