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PDBsum entry 2zm6
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Tunnel analysis for: 2zm6 calculated with  MOLE 2.0
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PDB id
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2zm6
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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9 tunnels,
coloured by tunnel radius |
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9 tunnels,
coloured by
tunnel radius
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9 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.20 |
1.19 |
57.3 |
-1.35 |
-0.40 |
15.7 |
79 |
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7 |
0 |
0 |
2 |
1 |
1 |
0 |
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U 14 A G 521 A C 522 A A 523 A G 524 A C 525 A C
526 A G 527 A A 913 A A 914 A A 1396 A C 1397 A G
1401 A C 1402 A C 1403 A A 1492 A A 1493 A
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2 |
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1.11 |
1.10 |
69.5 |
-1.67 |
-0.49 |
18.9 |
79 |
11 |
1 |
1 |
1 |
1 |
1 |
0 |
C 501 A G 502 A C 503 A C 504 A G 521 A C 522 A A
523 A G 524 A C 536 A G 537 A A 539 A
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3 |
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1.13 |
1.13 |
94.0 |
-1.22 |
-0.50 |
15.6 |
77 |
10 |
1 |
0 |
3 |
2 |
0 |
0 |
C 23 A U 24 A C 25 A C 242 A G 286 A U 287 A G
521 A C 522 A A 523 A G 524 A U 552 A A 553 A C
554 A C 555 A C 562 A G 885 A A 907 A A 908 A C
1479 A
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4 |
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1.17 |
1.16 |
95.9 |
-1.21 |
-0.56 |
14.0 |
80 |
9 |
0 |
0 |
2 |
1 |
0 |
0 |
C 23 A U 24 A C 25 A G 521 A C 522 A A 523 A G
524 A U 552 A A 553 A C 554 A C 555 A A 573 A A
574 A U 884 A G 885 A G 886 A G 887 A G 888 A A
889 A G 890 A A 908 A U 1510 A G 1511 A U 1512 A
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5 |
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1.22 |
1.21 |
106.3 |
-1.51 |
-0.60 |
17.7 |
81 |
11 |
2 |
1 |
1 |
1 |
0 |
0 |
U 5 A G 6 A A 26 A G 27 A G 28 A G 29 A G 297 A G
299 A C 503 A C 508 A A 509 A G 521 A C 522 A A
523 A G 524 A G 544 A C 545 A C 549 A G 550 A U
551 A A 611 A C 612 A C 613 A G 628 A G 629 A G
630 A
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6 |
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1.23 |
1.21 |
112.8 |
-1.77 |
-0.58 |
19.2 |
80 |
13 |
4 |
1 |
1 |
1 |
1 |
0 |
A 26 A G 27 A G 28 A G 29 A C 401 A C 503 A C 508
A A 509 A G 521 A C 522 A A 523 A G 524 A G 544 A
C 545 A C 549 A G 550 A U 551 A C 612 A C 613 A C
615 A G 616 A A 621 A A 622 A C 623 A
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7 |
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1.16 |
1.15 |
112.6 |
-1.02 |
-0.62 |
12.5 |
79 |
10 |
1 |
0 |
2 |
1 |
0 |
0 |
C 23 A U 24 A C 25 A A 243 A U 244 A G 521 A C
522 A A 523 A G 524 A U 552 A A 553 A C 554 A C
555 A C 562 A G 760 A G 761 A C 762 A G 763 A G
765 A C 811 A C 812 A C 882 A C 883 A U 884 A G
885 A G 895 A C 896 A C 897 A G 898 A G 903 A C
904 A U 905 A G 906 A A 907 A A 908 A
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8 |
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1.16 |
1.16 |
116.2 |
-1.50 |
-0.61 |
16.1 |
80 |
11 |
3 |
1 |
1 |
1 |
0 |
0 |
A 26 A G 27 A G 28 A G 29 A C 401 A C 503 A C 508
A A 509 A G 521 A C 522 A A 523 A G 524 A G 544 A
C 545 A C 549 A G 550 A U 551 A U 605 A A 608 A A
609 A G 610 A A 611 A C 612 A C 613 A A 614 A A
622 A C 623 A C 624 A G 625 A U 626 A G 627 A G
628 A G 629 A
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9 |
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1.20 |
1.20 |
142.4 |
-1.17 |
-0.66 |
12.7 |
81 |
10 |
3 |
1 |
1 |
1 |
0 |
0 |
A 26 A G 27 A G 28 A G 29 A U 30 A G 44 A U 45 A
U 294 A C 295 A C 307 A C 308 A C 355 A A 356 A C
369 A C 370 A G 371 A C 372 A A 373 A C 385 A C
386 A U 387 A G 388 A C 390 A G 391 A G 392 A A
393 A C 400 A C 401 A U 480 A C 503 A C 508 A A
509 A G 521 A C 522 A A 523 A G 524 A G 544 A C
545 A C 549 A G 550 A U 551 A A 609 A G 610 A C
623 A C 624 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program