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PDBsum entry 2zkd
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Tunnel analysis for: 2zkd calculated with  MOLE 2.0
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PDB id
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2zkd
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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3 tunnels,
coloured by tunnel radius |
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3 tunnels,
coloured by
tunnel radius
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3 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.65 |
1.65 |
26.9 |
-1.29 |
-0.58 |
6.3 |
90 |
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2 |
0 |
2 |
1 |
0 |
1 |
0 |
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DG 7 E DA 8 E DT 9 E DT 10 E DG 11 E DC 12 E DT 5
F DC 6 F
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2 |
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1.28 |
1.33 |
83.4 |
-1.10 |
-0.28 |
12.2 |
83 |
7 |
0 |
2 |
4 |
3 |
1 |
0 |
DT 10 D DA 11 D DG 12 D DC 1 E DT 2 E DG 7 E DA 8
E DT 9 E DT 5 F DC 6 F 5CM 7 F DG 8 F
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3 |
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1.22 |
1.22 |
86.3 |
-1.25 |
-0.47 |
12.0 |
82 |
7 |
0 |
3 |
2 |
2 |
1 |
0 |
DC 1 C DT 2 C DA 4 D DT 5 D DC 6 D 5CM 7 D DG 8 D
DT 10 D DG 12 D DC 1 E DT 2 E DG 7 E DA 8 E DT 9
E DT 5 F DC 6 F 5CM 7 F DG 8 F DT 10 F DA 11 F
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program