PDBsum entry 2yzd Go to PDB code:  Pore analysis for: 2yzd calculated with MOLE 2.0 PDB id 2yzd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   23 pores, coloured by radius 23 pores, coloured by radius 23 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.22 2.39 48.6 -2.21 -0.66 21.5 81 3 5 7 2 2 1 0   2 1.20 1.50 69.5 -1.98 -0.39 21.6 79 7 8 7 2 5 1 0   3 1.17 1.51 71.5 -2.19 -0.53 25.3 78 8 9 7 1 6 1 0   4 2.22 2.77 75.8 -3.03 -0.76 30.5 81 12 10 12 0 4 0 0   5 1.31 1.46 75.8 -1.68 -0.37 18.8 79 7 7 8 3 5 1 0   6 2.22 2.77 75.8 -3.10 -0.75 30.4 82 11 11 14 0 4 0 0   7 1.28 1.47 78.5 -2.13 -0.41 22.9 82 10 9 9 1 4 2 0   8 1.24 1.54 81.4 -2.62 -0.52 29.4 79 10 11 7 1 6 1 0   9 1.31 1.50 83.7 -2.39 -0.59 25.7 78 11 10 9 1 6 2 0   10 1.68 2.92 83.7 -3.10 -0.76 31.3 82 15 12 15 0 3 1 0   11 1.33 1.50 83.8 -2.40 -0.56 25.9 79 11 11 10 1 6 2 0   12 2.08 2.36 86.0 -2.50 -0.71 22.6 85 9 6 10 2 2 1 0   13 1.30 1.47 87.6 -2.46 -0.55 28.0 78 12 12 9 1 7 1 0   14 1.30 1.47 87.6 -2.49 -0.52 28.3 79 11 13 10 1 7 1 0   15 1.31 1.48 91.3 -2.25 -0.52 24.9 80 10 9 10 1 6 1 0   16 1.27 1.45 92.3 -1.83 -0.25 24.3 75 13 13 3 2 8 3 0   17 1.31 1.50 93.4 -2.40 -0.52 26.9 79 14 12 11 1 7 2 0   18 1.16 1.48 93.6 -1.93 -0.29 24.9 75 13 12 4 2 9 2 0   19 2.08 2.34 113.8 -2.85 -0.75 28.9 82 15 12 15 2 4 1 0   20 2.08 2.34 113.8 -2.89 -0.74 29.0 82 14 13 16 3 4 1 0   21 1.18 1.47 119.4 -2.57 -0.58 29.0 82 13 13 9 3 5 2 0   22 1.29 1.47 129.2 -2.24 -0.58 24.2 81 13 12 12 3 6 2 0   23 1.28 1.55 179.9 -1.94 -0.35 22.7 76 19 21 4 6 9 6 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.