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PDBsum entry 2yoc

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2yoc calculated with MOLE 2.0 PDB id
2yoc
Pores calculated on whole structure Pores calculated excluding ligands

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8 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.06 2.05 27.8 -1.96 -0.76 18.8 91 2 5 4 1 0 1 0  CA 2078 B
2 3.31 4.68 43.0 -2.11 -0.83 22.7 91 0 9 9 2 1 1 0  CA 2074 A
3 3.01 3.23 50.4 -0.66 -0.45 12.2 98 0 6 9 5 0 0 0  
4 2.04 2.06 51.4 -0.75 -0.45 8.2 92 1 2 6 6 1 2 0  
5 1.78 2.01 59.2 -1.28 -0.54 15.1 93 3 4 7 6 1 0 0  
6 1.78 2.01 59.5 -0.43 -0.14 9.7 93 3 0 4 10 1 0 0  
7 2.04 2.13 61.1 -1.61 -0.66 14.1 87 1 6 7 2 2 3 0  CA 2074 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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