PDBsum entry 2ynb Go to PDB code:  Tunnel analysis for: 2ynb calculated with MOLE 2.0 PDB id 2ynb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.51 1.76 26.0 -1.12 -0.57 16.5 85 3 3 2 3 2 0 0   2 1.50 1.79 28.6 -0.68 -0.49 14.2 85 2 1 2 4 1 0 0   3 1.51 1.77 30.4 -1.07 -0.61 15.7 85 3 3 2 3 2 0 0   4 1.16 1.37 34.6 -0.69 -0.47 13.3 89 1 2 4 5 2 0 0   5 1.15 1.35 40.7 -0.91 -0.57 13.8 92 1 3 6 5 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.