PDBsum entry 2yid Go to PDB code:  Pore analysis for: 2yid calculated with MOLE 2.0 PDB id 2yid Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 16 pores, coloured by radius 16 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.65 1.65 25.8 -0.52 -0.26 12.8 89 3 2 3 5 0 0 0   2 1.86 1.94 29.1 -0.22 -0.28 10.0 87 3 2 5 5 0 3 0   3 1.96 2.32 29.3 -0.60 -0.51 10.1 87 2 1 8 3 0 2 0   4 2.02 2.31 33.0 -0.53 -0.47 8.8 90 2 2 10 4 0 2 0   5 1.62 1.61 51.7 -0.64 -0.15 17.5 83 6 7 3 7 1 0 0   6 1.62 1.72 69.1 -0.64 0.10 16.2 75 9 4 12 4 12 0 0  TD7 2001 C TD7 2001 D 7 1.50 2.56 83.0 -0.49 -0.43 8.8 80 4 4 9 7 0 5 0   8 1.50 2.68 85.3 -0.28 -0.33 8.8 80 3 3 5 8 0 4 0   9 1.47 1.81 91.2 -1.36 -0.57 20.7 85 6 10 7 3 0 0 0   10 1.76 1.96 111.3 -1.53 -0.45 21.8 81 11 12 4 9 3 2 0   11 1.81 3.08 113.5 -1.73 -0.37 26.2 83 13 12 7 11 3 3 0   12 1.30 1.30 137.0 -1.80 -0.55 25.0 83 16 15 6 6 1 1 0   13 1.62 1.82 176.2 -1.80 -0.56 21.6 84 14 17 11 9 3 2 0   14 1.57 2.98 175.9 -0.79 -0.21 13.7 78 12 9 24 10 12 5 0  TD7 2001 A TD7 2001 B 15 1.25 1.24 261.3 -1.91 -0.63 23.9 85 23 25 12 10 1 2 0   16 1.14 1.01 351.2 -1.89 -0.47 24.4 82 34 31 19 12 8 3 1  TD7 2001 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.