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PDBsum entry 2y9c
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Pore analysis for: 2y9c calculated with  MOLE 2.0
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PDB id
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2y9c
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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36 pores,
coloured by radius |
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36 pores,
coloured by radius
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36 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.39 |
1.54 |
27.8 |
-1.66 |
-0.52 |
16.8 |
85 |
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4 |
2 |
2 |
3 |
0 |
0 |
1 |
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G 821 Y
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2 |
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1.63 |
2.01 |
30.9 |
-0.75 |
-0.66 |
9.9 |
89 |
2 |
0 |
2 |
1 |
0 |
1 |
0 |
C 843 X U 844 X C 845 X U 846 X C 855 X C 856 X U
857 X A 858 X
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3 |
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2.02 |
4.92 |
33.8 |
-1.78 |
-0.77 |
14.9 |
84 |
2 |
2 |
2 |
0 |
0 |
1 |
0 |
G 841 Y U 842 Y C 843 Y A 858 Y A 859 Y G 867 Y
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4 |
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1.22 |
1.81 |
50.2 |
0.71 |
0.11 |
7.8 |
77 |
2 |
2 |
2 |
10 |
0 |
2 |
1 |
G 821 X G 822 X C 823 X A 824 X U 825 X
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5 |
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1.74 |
2.06 |
50.5 |
-1.37 |
-0.48 |
17.9 |
90 |
4 |
2 |
4 |
3 |
0 |
1 |
0 |
C 843 X U 857 X A 858 X A 859 X
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6 |
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2.79 |
2.78 |
53.8 |
-1.37 |
-0.72 |
14.8 |
86 |
6 |
1 |
2 |
0 |
1 |
0 |
0 |
G 841 Y U 842 Y C 843 Y U 844 Y C 856 Y U 857 Y A
858 Y A 859 Y G 860 Y A 862 Y G 863 Y A 864 Y C
865 Y
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7 |
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2.65 |
2.82 |
55.8 |
-1.44 |
-0.56 |
17.3 |
83 |
5 |
2 |
2 |
2 |
0 |
1 |
0 |
U 844 X C 845 X U 846 X C 855 X C 856 X U 857 X A
858 X A 859 X
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8 |
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2.12 |
4.52 |
57.6 |
-1.68 |
-0.62 |
21.2 |
79 |
8 |
3 |
1 |
1 |
1 |
0 |
0 |
G 841 Y U 842 Y G 860 Y A 862 Y G 863 Y A 864 Y C
865 Y
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9 |
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1.96 |
2.06 |
60.1 |
-1.12 |
-0.45 |
8.4 |
88 |
4 |
0 |
7 |
3 |
2 |
0 |
0 |
A 840 X G 841 X U 842 X C 843 X A 859 X G 867 X
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10 |
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2.55 |
2.61 |
60.7 |
-1.88 |
-0.55 |
18.8 |
81 |
6 |
3 |
4 |
2 |
1 |
1 |
0 |
A 840 X G 841 X U 857 X A 858 X A 859 X G 867 X
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11 |
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1.94 |
2.04 |
61.6 |
-1.25 |
-0.68 |
15.8 |
95 |
4 |
2 |
3 |
2 |
0 |
0 |
0 |
A 840 X G 841 X U 842 X C 843 X U 844 X A 859 X G
860 X A 862 X G 863 X A 864 X C 865 X
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12 |
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1.33 |
1.98 |
62.4 |
-0.27 |
-0.15 |
9.9 |
84 |
5 |
2 |
4 |
7 |
2 |
1 |
0 |
G 801 Y U 819 Y C 820 Y G 821 Y G 822 Y U 835 Y
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13 |
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2.51 |
2.54 |
62.1 |
-0.78 |
-0.38 |
16.6 |
87 |
7 |
3 |
1 |
4 |
0 |
0 |
0 |
A 840 X G 841 X U 842 X G 860 X A 862 X G 863 X A
864 X C 865 X
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14 |
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2.81 |
3.49 |
63.7 |
-1.13 |
-0.72 |
13.5 |
93 |
3 |
2 |
1 |
1 |
0 |
0 |
0 |
A 840 X G 841 X U 842 X C 843 X U 844 X C 845 X U
846 X C 855 X C 856 X U 857 X A 858 X A 859 X G
860 X A 862 X G 863 X A 864 X C 865 X
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15 |
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2.56 |
2.56 |
64.7 |
-1.59 |
-0.65 |
16.4 |
87 |
5 |
2 |
4 |
1 |
1 |
0 |
0 |
A 840 X G 841 X U 842 X C 843 X A 859 X G 860 X A
862 X G 863 X A 864 X C 865 X G 867 X
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16 |
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1.34 |
1.93 |
73.7 |
-0.30 |
-0.01 |
12.7 |
86 |
6 |
3 |
5 |
10 |
2 |
1 |
1 |
G 801 Y U 835 Y
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17 |
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1.46 |
1.45 |
89.5 |
-1.20 |
-0.77 |
11.0 |
85 |
5 |
3 |
3 |
0 |
0 |
0 |
0 |
G 801 Y C 802 Y C 803 Y G 818 Y U 819 Y C 820 Y G
821 Y G 822 Y C 823 Y G 828 Y A 830 Y U 832 Y U
833 Y U 834 Y U 836 Y G 837 Y A 838 Y C 839 Y A
840 Y G 841 Y G 863 Y A 864 Y C 865 Y
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18 |
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1.88 |
1.88 |
107.9 |
-1.23 |
-0.68 |
12.9 |
87 |
3 |
3 |
4 |
1 |
0 |
0 |
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U 819 X C 820 X G 821 X G 822 X C 823 X A 824 X U
825 X A 830 X U 832 X U 833 X U 834 X U 836 X G
837 X A 838 X C 839 X A 840 X G 841 X U 842 X C
843 X U 844 X C 845 X U 846 X C 855 X C 856 X U
857 X A 858 X A 859 X G 860 X
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19 |
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1.84 |
1.84 |
108.9 |
-1.56 |
-0.64 |
15.4 |
84 |
5 |
3 |
7 |
1 |
1 |
0 |
0 |
U 819 X C 820 X G 821 X G 822 X C 823 X A 824 X U
825 X A 830 X U 832 X U 833 X U 834 X U 836 X G
837 X A 838 X C 839 X A 840 X G 841 X U 842 X C
843 X A 859 X G 860 X G 867 X
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20 |
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1.57 |
1.95 |
120.1 |
-1.47 |
-0.68 |
16.7 |
90 |
5 |
4 |
6 |
3 |
0 |
0 |
0 |
G 818 X U 819 X A 830 X U 832 X U 833 X U 834 X U
836 X G 837 X A 838 X C 839 X A 840 X G 841 X U
842 X C 843 X U 844 X A 859 X G 860 X
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21 |
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1.09 |
1.62 |
128.9 |
-1.26 |
-0.49 |
20.8 |
85 |
9 |
7 |
1 |
5 |
0 |
2 |
0 |
G 841 Y U 842 Y C 843 Y U 844 Y C 856 Y U 857 Y A
858 Y A 859 Y G 860 Y G 861 Y A 862 Y G 863 Y
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22 |
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2.56 |
3.56 |
134.4 |
-1.92 |
-0.68 |
11.6 |
94 |
5 |
3 |
13 |
2 |
1 |
0 |
0 |
A 864 X C 865 X G 863 Y A 864 Y C 865 Y
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23 |
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2.60 |
3.57 |
154.4 |
-1.79 |
-0.70 |
12.0 |
94 |
7 |
4 |
15 |
2 |
1 |
0 |
0 |
A 864 X C 865 X G 841 Y U 842 Y C 843 Y U 844 Y C
856 Y U 857 Y A 858 Y A 859 Y G 860 Y A 862 Y G
863 Y C 865 Y U 866 Y
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24 |
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2.02 |
2.03 |
188.1 |
-1.78 |
-0.70 |
13.5 |
90 |
9 |
6 |
15 |
3 |
1 |
0 |
0 |
A 840 X G 841 X U 842 X C 843 X U 844 X A 859 X G
860 X A 862 X G 863 X A 864 X C 865 X G 841 Y U
842 Y G 860 Y A 862 Y G 863 Y C 865 Y U 866 Y
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25 |
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1.19 |
1.44 |
194.3 |
-1.54 |
-0.62 |
13.3 |
88 |
11 |
5 |
13 |
5 |
2 |
0 |
0 |
A 840 X G 841 X U 842 X G 860 X A 862 X G 863 X A
864 X C 865 X G 841 Y U 842 Y G 860 Y A 862 Y G
863 Y C 865 Y U 866 Y
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26 |
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1.78 |
1.78 |
208.7 |
-1.90 |
-0.71 |
13.6 |
91 |
7 |
5 |
16 |
3 |
1 |
0 |
0 |
G 818 X U 819 X A 830 X U 832 X U 833 X U 834 X U
836 X G 837 X A 838 X C 839 X A 840 X C 865 X U
866 X G 863 Y A 864 Y C 865 Y
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27 |
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1.84 |
1.84 |
218.2 |
-1.87 |
-0.68 |
14.4 |
89 |
10 |
7 |
17 |
3 |
1 |
0 |
0 |
U 819 X C 820 X G 821 X G 822 X C 823 X A 824 X U
825 X A 830 X U 832 X U 833 X U 834 X U 836 X G
837 X A 838 X C 839 X A 840 X C 865 X U 866 X G
841 Y U 842 Y G 860 Y A 862 Y G 863 Y C 865 Y U
866 Y
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28 |
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2.91 |
2.91 |
53.8 |
-1.39 |
-0.61 |
15.1 |
83 |
4 |
2 |
2 |
2 |
1 |
0 |
0 |
C 839 V A 840 V G 841 V U 842 V C 843 V U 844 V C
845 V U 846 V C 856 V U 857 V A 858 V A 859 V G
860 V G 863 V C 865 V
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29 |
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1.92 |
2.27 |
55.2 |
-0.38 |
-0.27 |
12.8 |
86 |
3 |
2 |
1 |
3 |
0 |
1 |
0 |
U 842 V C 843 V U 844 V C 845 V U 846 V C 856 V U
857 V A 858 V A 859 V G 860 V G 861 V A 862 V G
863 V
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30 |
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1.92 |
2.27 |
55.4 |
-0.90 |
-0.25 |
17.9 |
85 |
6 |
3 |
1 |
5 |
1 |
0 |
0 |
G 860 V G 861 V A 862 V G 863 V
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31 |
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2.20 |
2.21 |
93.7 |
-1.08 |
-0.54 |
13.9 |
84 |
6 |
3 |
5 |
4 |
2 |
0 |
0 |
G 801 V C 820 V G 821 V A 830 V U 833 V U 834 V U
835 V U 836 V G 837 V A 838 V C 839 V G 863 V C
865 V
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32 |
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2.21 |
2.22 |
103.1 |
-0.96 |
-0.64 |
11.6 |
86 |
5 |
3 |
5 |
2 |
1 |
0 |
0 |
G 801 V C 820 V G 821 V A 830 V U 833 V U 834 V U
835 V U 836 V G 837 V A 838 V C 839 V A 840 V G
841 V U 842 V C 843 V U 844 V C 845 V U 846 V C
856 V U 857 V A 858 V A 859 V G 860 V G 863 V C
865 V
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33 |
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1.91 |
2.26 |
106.5 |
-0.63 |
-0.41 |
13.2 |
86 |
6 |
4 |
4 |
5 |
1 |
1 |
0 |
G 801 V C 820 V G 821 V A 830 V U 833 V U 834 V U
835 V U 836 V G 837 V A 838 V C 839 V G 860 V G
861 V A 862 V G 863 V C 865 V
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34 |
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2.02 |
2.02 |
108.7 |
-1.09 |
-0.53 |
12.5 |
79 |
7 |
3 |
4 |
6 |
2 |
1 |
0 |
C 802 V U 826 V G 827 V G 828 V C 829 V A 830 V A
831 V U 832 V U 833 V U 834 V U 835 V U 836 V G
837 V A 838 V C 839 V G 863 V C 865 V
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35 |
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2.18 |
2.18 |
118.1 |
-1.02 |
-0.65 |
10.7 |
80 |
6 |
3 |
4 |
4 |
1 |
1 |
0 |
C 802 V U 826 V G 827 V G 828 V C 829 V A 830 V A
831 V U 832 V U 833 V U 834 V U 835 V U 836 V G
837 V A 838 V C 839 V A 840 V G 841 V U 842 V C
843 V U 844 V C 845 V U 846 V C 856 V U 857 V A
858 V A 859 V G 860 V G 863 V C 865 V
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36 |
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1.97 |
2.26 |
121.6 |
-0.71 |
-0.46 |
11.7 |
82 |
7 |
4 |
3 |
7 |
1 |
2 |
0 |
C 802 V U 826 V G 827 V G 828 V C 829 V A 830 V A
831 V U 832 V U 833 V U 834 V U 835 V U 836 V G
837 V A 838 V C 839 V G 860 V G 861 V A 862 V G
863 V C 865 V
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program