PDBsum entry 2y2d

Tunnel analysis for: 2y2d calculated with

MOLE 2.0

PDB id

2y2d

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

9 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.16

1.93

23.2

-0.11

-0.05

17.4

68

2

2

0

5

1

1

0

2

1.16

2.01

25.0

-0.67

0.03

19.5

65

2

2

0

4

2

1

0

3

1.18

2.12

30.6

-0.16

-0.29

11.0

79

1

2

2

5

1

0

0

4

1.18

1.36

16.3

-1.09

-0.58

14.6

79

2

3

1

1

1

2

0

5

1.18

1.28

19.8

-1.38

-0.58

17.6

74

1

4

1

1

2

2

0

6

1.16

1.29

24.0

-1.05

-0.67

16.4

74

0

3

1

1

1

2

1

7

1.82

1.82

18.2

-0.35

0.06

15.4

78

2

2

1

5

2

1

0

8

1.63

1.79

15.5

0.20

0.34

14.8

79

1

2

1

5

2

0

0

9

1.19

4.07

21.4

-1.35

-0.29

27.2

83

2

4

0

3

0

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.