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PDBsum entry 2y1j
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Pore analysis for: 2y1j calculated with  MOLE 2.0
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PDB id
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2y1j
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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3 pores,
coloured by radius |
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4 pores,
coloured by radius
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4 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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3.69 |
5.26 |
26.2 |
-2.74 |
-0.57 |
25.2 |
84 |
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4 |
2 |
3 |
1 |
1 |
0 |
0 |
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DA 24 B DA 25 B DC 26 B DC 27 B
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2 |
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1.22 |
1.88 |
28.5 |
-2.73 |
-0.70 |
19.5 |
86 |
2 |
1 |
4 |
0 |
1 |
0 |
0 |
DA 24 B DA 25 B DC 26 B
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3 |
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1.25 |
1.25 |
36.0 |
-1.85 |
-0.49 |
24.6 |
82 |
5 |
2 |
2 |
4 |
0 |
0 |
0 |
DC 22 B DA 25 B DC 26 B DC 27 B DG 7 C DG 10 C
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4 |
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1.25 |
1.25 |
42.4 |
-1.52 |
-0.54 |
21.2 |
86 |
4 |
2 |
4 |
3 |
0 |
0 |
0 |
DA 25 B DC 26 B DC 27 B DG 7 C QBT 8 C THM 9 C DG
10 C
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program