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PDBsum entry 2xfm

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Top Page protein dna_rna tunnels links
Tunnel analysis for: 2xfm calculated with MOLE 2.0 PDB id
2xfm
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.18 2.57 23.1 1.08 0.88 1.2 67 0 0 1 6 4 2 0  
2 1.16 2.73 25.2 0.62 0.76 4.4 70 0 2 1 6 3 2 0  
3 1.16 2.19 15.6 2.97 0.85 1.4 75 0 1 0 5 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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