PDBsum entry 2xdn Go to PDB code:  Tunnel analysis for: 2xdn calculated with MOLE 2.0 PDB id 2xdn Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.43 27.8 -0.48 -0.22 17.9 77 5 5 0 6 1 0 1   2 1.26 2.15 31.7 -0.89 -0.28 20.6 77 4 5 0 5 2 0 1   3 1.20 1.39 40.2 -1.20 -0.36 20.4 80 6 5 1 4 2 0 1   4 1.35 1.51 40.2 -1.05 -0.37 20.7 82 7 6 1 5 1 0 1   5 1.51 1.92 15.4 -0.25 -0.09 15.3 89 2 3 0 3 0 0 0   6 1.12 1.16 16.6 0.20 -0.18 8.7 87 1 2 0 4 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.