spacer
spacer

PDBsum entry 2x7f

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2x7f calculated with MOLE 2.0 PDB id
2x7f
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
10 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.66 4.65 46.1 -2.11 -0.48 20.7 81 5 3 2 1 1 1 1  
2 1.87 2.09 52.1 -0.29 -0.13 11.2 85 2 4 2 7 1 0 0  824 500 C
3 1.15 1.67 60.3 -0.12 -0.01 15.6 83 5 5 2 10 2 0 0  824 500 B
4 1.10 1.12 61.1 -0.30 -0.10 15.9 85 4 6 2 8 1 0 0  824 500 B
5 1.25 1.22 64.2 -0.25 -0.10 13.9 84 3 6 2 8 1 0 0  824 500 B
6 1.17 1.67 64.4 -0.41 -0.13 14.3 83 4 5 2 9 1 0 0  824 500 B
7 1.60 2.12 64.9 -2.43 -0.55 27.4 84 5 6 6 2 1 0 0  
8 1.79 1.79 69.9 -2.41 -0.49 24.8 82 7 5 4 2 2 1 0  
9 1.16 1.68 75.6 -0.59 -0.08 16.5 85 7 4 5 10 2 0 0  824 500 C
10 1.77 2.10 76.4 -0.39 -0.07 14.7 84 6 4 4 10 2 0 0  824 500 C
11 2.43 4.28 119.3 -2.03 -0.58 23.9 82 13 6 6 3 1 0 0  
12 1.39 1.94 82.3 0.37 0.12 6.5 68 5 1 2 12 4 4 2  
13 1.40 2.03 94.7 -1.03 -0.24 12.9 71 7 5 2 7 4 3 1  
14 1.31 2.24 97.6 -0.26 -0.01 10.9 76 5 5 2 12 2 3 0  824 500 E
15 1.47 1.65 27.1 -1.08 -0.21 12.0 67 3 1 1 1 1 3 0  
16 2.09 3.59 48.3 0.70 0.11 7.3 79 2 2 1 8 2 0 0  824 500 D
17 1.44 1.62 77.6 1.01 0.35 5.7 79 3 2 3 16 5 0 0  824 500 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer