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PDBsum entry 2wrn
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2wrn calculated with MOLE 2.0 PDB id
2wrn
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.75 2.75 36.5 -0.44 -0.78 3.3 58 0 0 0 0 0 1 0  A 675 A A 676 A U 677 A C 679 A C 680 A C 681 A G
682 A G 703 A A 704 A U 705 A A 706 A C 708 A G
709 A G 710 A G 711 A
2 2.80 2.80 40.3 -0.44 -0.60 6.8 83 1 0 0 0 1 0 0  U 677 A U 678 A C 679 A C 680 A C 681 A G 682 A G
690 A G 691 A C 699 A G 700 A G 703 A A 704 A U
705 A A 706 A G 799 A
3 2.16 2.16 42.8 -0.51 -0.53 7.4 75 2 0 0 0 1 1 0  A 675 A A 676 A U 677 A U 678 A C 679 A G 691 A A
706 A C 707 A C 708 A G 709 A G 710 A G 711 A
4 2.16 2.16 45.7 -0.41 -0.63 6.3 84 2 0 0 1 1 0 0  G 673 A G 674 A A 675 A A 676 A U 677 A U 678 A C
679 A G 691 A A 706 A C 707 A C 708 A G 709 A G
710 A G 711 A A 712 A G 713 A
5 1.11 2.29 47.5 1.05 0.22 9.0 78 2 1 1 13 1 0 0  G 671 A U 672 A G 673 A C 736 A
6 2.48 2.48 108.5 -0.74 -0.67 8.3 80 2 2 3 2 2 2 0  G 718 A C 719 A G 721 A A 722 A U 723 A A 733 A A
819 A C 856 A G 858 A A 859 A A 860 A G 861 A U
863 A C 866 A G 867 A C 868 A A 919 A U 920 A C
1076 A G 1077 A U 1078 A G 1082 A G 1392 A C 1527
A U 1528 A G 1529 A A 1531 A
7 3.15 3.15 113.6 -0.54 -0.79 4.1 92 1 0 2 1 0 1 0  PAR 6 1 G 570 A U 571 A A 572 A A 573 A G 718 A C
719 A G 721 A A 722 A U 723 A A 733 A A 819 A C
856 A C 866 A G 867 A C 868 A G 887 A G 916 A G
917 A A 918 A A 919 A U 1393 A A 1394 A C 1403 A
C 1404 A G 1405 A C 1490 A G 1491 A A 1493 A G
1494 A U 1495 A C 1496 A U 1498 A U 1510 A C 1527
A U 1528 A G 1529 A G 1530 A A 1531 A G 27 V A 36
V A 37 V U 20 X C 21 X
8 1.51 1.51 115.5 -0.43 -0.79 3.5 70 0 0 0 0 0 0 0  A 695 A A 696 A U 697 A G 786 A A 787 A U 788 A U
789 A A 790 A G 791 A C 1496 A G 24 V C 25 V A 26
V G 27 V A 37 V A 38 V U 39 V C 40 V C 41 V C 42
V G 6 W A 7 W U 8 W U 12 W C 13 W A 14 W G 15 W U
16 W U 20 W G 24 W C 25 W A 37 W A 38 W U 59 W U
60 W C 61 W
9 2.81 2.81 118.1 -0.78 -0.56 9.3 76 7 2 0 1 3 0 0  G 693 A G 929 A C 930 A C 931 A C 932 A G 1068 A
U 1085 A U 1086 A G 1089 A U 1090 A U 1091 A G
1094 A C 1096 A C 1097 A A 1105 A G 1106 A U 1380
A U 1381 A G 1387 A C 1388 A A 15 X
10 1.46 1.56 121.8 -2.34 -0.54 30.4 80 13 9 2 5 1 1 0  U 5 A G 299 A A 300 A U 565 A G 566 A G 631 A G
861 A C 862 A G 876 A
11 1.47 1.47 124.7 -0.57 -0.71 5.8 70 0 0 0 0 0 0 0  G 693 A A 695 A A 696 A U 697 A G 698 A G 786 A A
787 A U 788 A U 789 A C 795 A C 796 A U 1506 A G
6 W A 7 W U 8 W U 12 W C 13 W A 14 W G 15 W U 16
W U 20 W G 24 W C 25 W A 36 W A 37 W A 38 W U 59
W U 60 W C 61 W A 15 X A 16 X U 17 X
12 2.60 2.58 124.2 -1.41 -0.52 15.0 76 10 5 5 2 3 1 0  U 420 A U 421 A C 422 A U 512 A C 513 A A 532 A U
534 A U 997 A C 1045 A A 1046 A C 1071 A G 1072 A
A 1105 A G 1106 A G 1193 A U 1194 A G 1207 A C
1208 A U 1211 A A 27 X
13 2.71 2.70 130.8 -1.13 -0.61 13.6 86 9 4 2 4 0 1 0  G 38 A G 39 A C 40 A A 393 A G 394 A C 395 A C
442 A A 520 A C 1409 A G 1494 A G 27 V G 10 Y C
11 Y C 25 Y G 26 Y A 38 Y G 39 Y G 49 Y U 66 Y A
67 Y
14 2.49 2.49 136.9 -0.68 -0.69 7.6 72 3 2 1 1 2 3 0  PAR 6 1 A 572 A A 573 A G 858 A A 859 A A 860 A G
861 A U 863 A C 866 A G 867 A G 887 A G 916 A G
917 A A 918 A A 919 A U 920 A C 1076 A G 1077 A U
1078 A G 1082 A G 1392 A U 1393 A A 1394 A C 1403
A C 1404 A G 1405 A C 1490 A G 1491 A A 1493 A G
1494 A U 1495 A C 1496 A U 1498 A U 1510 A G 1529
A G 1530 A G 27 V A 36 V A 37 V U 20 X C 21 X
15 3.06 3.06 143.1 -1.28 -0.62 13.2 75 11 5 5 2 2 2 0  PAR 6 1 U 12 A U 13 A U 14 A G 15 A A 16 A G 505
A G 506 A U 534 A C 1071 A G 1072 A A 1105 A G
1106 A G 1193 A U 1194 A C 1397 A C 1403 A C 1404
A A 1492 A A 1493 A G 1494 A U 1495 A C 1496 A U
1498 A G 27 V A 36 V A 37 V U 20 X C 21 X C 23 X
C 24 X A 25 X A 26 X A 27 X
16 2.62 2.62 146.8 -0.95 -0.74 10.4 73 6 0 0 0 0 1 0  C 418 A U 420 A C 422 A C 514 A G 515 A U 516 A U
531 A U 955 A U 956 A U 957 A U 960 A C 985 A A
994 A C 995 A A 996 A U 997 A C 1006 A G 1017 A C
1018 A U 1020 A C 1037 A C 1038 A C 1039 A C 1045
A A 1046 A G 1047 A C 1051 A A 1204 A U 1205 A G
1206 A G 1207 A C 1208 A C 1209 A C 1210 A U 1211
A C 1214 A G 27 V G 28 V C 29 Y C 30 Y C 31 Y G
40 Y G 41 Y
17 1.48 1.51 154.9 -1.50 -0.67 18.3 82 10 6 2 4 0 1 0  U 5 A G 299 A A 300 A U 565 A G 566 A G 567 A G
568 A C 569 A G 631 A A 665 A G 718 A C 719 A G
721 A A 722 A U 723 A G 724 A C 726 A G 727 A A
729 A C 732 A A 733 A G 818 A G 821 A C 822 A G
823 A C 824 A G 854 A G 855 A U 871 A A 872 A A
873 A G 874 A C 875 A G 876 A C 877 A C 1527 A
18 1.98 1.98 158.2 -0.62 -0.80 5.9 86 4 2 1 0 0 0 0  A 665 A U 669 A G 670 A G 671 A U 672 A G 673 A A
712 A G 713 A G 714 A A 715 A A 716 A C 717 A U
723 A C 732 A A 733 A C 806 A A 819 A C 856 A C
866 A G 867 A C 868 A A 919 A U 920 A U 921 A G
922 A G 1068 A C 1069 A U 1083 A U 1085 A U 1086
A G 1089 A U 1090 A G 1094 A C 1096 A C 1097 A A
1105 A G 1106 A C 1388 A C 1389 A U 1390 A U 1391
A G 1392 A G 1525 A G 1526 A C 1527 A U 1528 A G
1529 A A 1531 A
19 2.48 2.41 174.4 -1.54 -0.67 19.4 80 12 10 2 4 1 1 0  U 5 A G 6 A G 29 A U 30 A C 40 A G 41 A G 42 A C
43 A G 44 A U 45 A C 295 A U 296 A G 297 A G 299
A A 300 A C 307 A C 308 A G 391 A G 392 A A 393 A
G 394 A C 395 A G 396 A U 565 A G 566 A A 609 A G
610 A A 611 A C 612 A C 623 A C 624 A G 630 A G
631 A G 861 A C 862 A G 876 A
20 2.61 2.60 184.2 -0.59 -0.70 5.6 84 5 0 2 3 2 1 0  U 12 A U 13 A U 14 A G 15 A A 16 A U 420 A U 421
A C 422 A G 505 A G 506 A U 512 A C 513 A A 532 A
U 534 A G 570 A U 571 A A 572 A A 573 A G 718 A C
719 A G 721 A A 722 A U 723 A A 733 A A 819 A C
856 A C 866 A G 867 A C 868 A G 886 A G 887 A A
915 A G 916 A G 917 A A 918 A A 919 A U 997 A C
1045 A A 1046 A G 1207 A C 1208 A U 1211 A U 1393
A A 1394 A C 1397 A C 1403 A C 1404 A C 1490 A G
1491 A U 1510 A C 1527 A U 1528 A G 1529 A G 1530
A A 1531 A A 25 X A 26 X A 27 X
21 2.19 2.19 194.6 -0.97 -0.72 10.2 85 7 4 2 3 0 1 0  G 38 A G 39 A C 40 A A 393 A G 394 A C 395 A C
418 A U 420 A C 422 A C 442 A C 514 A G 515 A U
516 A G 517 A C 519 A A 520 A U 531 A U 997 A C
1045 A A 1046 A C 1051 A G 1207 A C 1208 A C 1209
A C 1210 A U 1211 A C 1214 A G 10 Y C 11 Y A 28 Y
C 29 Y C 30 Y G 49 Y U 66 Y A 67 Y
22 1.15 1.31 198.0 -0.95 -0.66 10.6 77 8 2 1 3 1 1 0  PAR 6 1 U 5 A G 238 A U 239 A C 240 A G 286 A U
287 A C 291 A G 292 A G 293 A U 294 A G 297 A G
299 A A 300 A G 301 A G 302 A A 303 A U 304 A G
305 A G 610 A G 630 A G 631 A A 632 A A 908 A A
909 A C 1403 A C 1404 A G 1405 A U 1406 A C 1407
A A 1408 A C 1409 A G 1410 A C 1411 A C 1412 A A
1413 A U 1414 A C 1479 A G 1480 A U 1481 A G 1482
A A 1483 A C 1484 A U 1485 A G 1486 A G 1487 A G
1488 A C 1490 A G 1491 A A 1493 A G 1494 A U 1495
A C 1496 A U 1498 A G 27 V A 36 V A 37 V U 20 X C
21 X
23 2.60 2.60 197.4 -0.72 -0.68 8.0 76 7 2 1 2 3 2 0  U 12 A U 13 A U 14 A G 15 A A 16 A U 420 A U 421
A C 422 A G 505 A G 506 A U 512 A C 513 A A 532 A
U 534 A A 572 A A 573 A G 858 A A 859 A A 860 A G
861 A U 863 A C 866 A G 867 A G 886 A G 887 A A
915 A G 916 A G 917 A A 918 A A 919 A U 920 A U
997 A C 1045 A A 1046 A C 1076 A G 1077 A U 1078
A G 1082 A G 1207 A C 1208 A U 1211 A G 1392 A U
1393 A A 1394 A C 1397 A C 1403 A C 1404 A C 1490
A G 1491 A U 1510 A G 1529 A G 1530 A A 25 X A 26
X A 27 X
24 1.18 1.18 202.9 -0.65 -0.71 7.4 73 0 0 0 0 0 0 0  G 693 A A 695 A A 696 A U 697 A A 787 A U 788 A U
789 A G 858 A A 859 A A 860 A G 861 A U 863 A C
866 A G 867 A U 920 A U 921 A G 922 A A 923 A C
924 A G 925 A G 926 A G 928 A C 930 A C 1076 A G
1077 A U 1078 A G 1081 A G 1082 A C 1382 A G 1387
A C 1388 A C 1389 A U 1390 A U 1391 A G 6 W A 7 W
U 8 W U 12 W C 13 W A 14 W G 15 W U 16 W U 20 W G
24 W C 25 W A 35 W A 36 W A 37 W A 38 W U 59 W U
60 W C 61 W A 16 X U 17 X
25 1.22 1.22 210.2 -0.52 -0.71 5.5 75 4 2 0 1 1 1 0  A 696 A U 697 A G 786 A A 787 A G 933 A C 934 A A
935 A C 936 A A 937 A C 967 A C 1063 A U 1065 A C
1066 A A 1111 A C 1112 A G 1155 A G 1156 A C 1158
A A 1183 A G 1184 A G 1185 A G 1186 A G 1187 A A
1339 A U 1341 A C 1342 A C 1383 A C 1384 A G 1385
A G 6 W A 7 W U 8 W U 12 W C 13 W A 14 W G 15 W U
16 W U 20 W G 24 W C 25 W A 26 W G 27 W G 28 W G
29 W G 30 W A 31 W U 32 W U 33 W G 34 W A 35 W A
37 W A 38 W U 39 W C 40 W U 59 W U 60 W C 61 W
26 1.80 1.80 214.2 -0.69 -0.76 7.7 88 5 1 0 1 0 0 0  A 53 A A 55 A U 56 A G 57 A C 58 A A 59 A G 61 A
U 62 A C 63 A G 64 A G 68 A G 69 A G 70 A C 71 A
C 72 A G 73 A C 76 A G 78 A G 79 A U 90 A C 91 A
C 92 A U 96 A G 97 A G 98 A U 99 A C 100 A A 101
A U 340 A C 341 A A 349 A G 350 A G 351 A U 359 A
A 360 A G 361 A G 362 A C 1409 A G 1410 A C 1411
A G 1494 A G 27 V U 6 Y C 11 Y U 12 Y C 13 Y G 24
Y C 25 Y G 26 Y A 38 Y G 39 Y C 69 Y A 70 Y G 71
Y C 72 Y C 74 Y C 75 Y
27 2.73 2.73 224.0 -0.95 -0.77 10.4 83 7 6 2 2 0 1 0  U 5 A G 126 A G 127 A U 129 A G 129 A i:A C 131 A
C 132 A U 133 A A 134 A C 135 A C 136 A C 137 A G
138 A G 139 A A 140 A A 141 A G 142 A A 143 A C
217 A C 218 A C 219 A G 220 A C 221 A U 222 A U
223 A C 224 A C 225 A G 226 A G 227 A A 228 A U
229 A G 230 A G 231 A G 299 A A 300 A U 565 A G
566 A G 567 A G 568 A C 569 A C 601 A A 602 A U
603 A G 604 A U 605 A G 606 A A 607 A G 628 A G
629 A G 630 A G 631 A A 665 A G 718 A C 719 A G
721 A A 722 A U 723 A G 724 A C 726 A G 727 A A
729 A C 732 A A 733 A G 818 A G 821 A C 822 A G
823 A C 824 A G 854 A G 855 A U 871 A A 872 A A
873 A G 874 A C 875 A G 876 A C 877 A C 1527 A
28 2.19 2.19 239.6 -0.49 -0.71 5.0 68 3 1 0 1 1 1 0  PAR 6 1 A 50 A G 117 A U 118 A A 119 A A 120 A G
122 A C 123 A G 124 A U 125 A G 126 A G 127 A U
129 A G 129 A i:A C 131 A C 132 A U 133 A A 134 A
C 135 A C 136 A C 137 A G 138 A G 139 A A 140 A A
141 A G 142 A A 143 A C 217 A C 218 A C 219 A G
220 A C 221 A U 222 A U 223 A C 224 A C 225 A G
226 A G 227 A A 228 A U 229 A G 230 A G 231 A G
232 A C 233 A C 234 A C 267 A G 286 A U 287 A A
288 A C 312 A A 313 A C 314 A G 319 A C 320 A C
328 A C 1403 A C 1404 A G 1405 A U 1406 A C 1407
A A 1408 A C 1409 A G 1410 A C 1411 A C 1412 A A
1413 A U 1414 A G 1423 A C 1424 A U 1425 A C 1426
A C 1479 A G 1480 A U 1481 A G 1482 A A 1483 A C
1484 A U 1485 A G 1486 A G 1487 A G 1488 A C 1490
A G 1491 A A 1493 A G 1494 A U 1495 A C 1496 A U
1498 A G 27 V A 36 V A 37 V U 20 X C 21 X
29 1.22 1.37 252.2 -0.91 -0.67 10.8 78 13 2 0 4 1 1 0  U 5 A U 12 A U 13 A U 14 A G 15 A A 16 A G 238 A
U 239 A C 241 A C 242 A A 243 A G 292 A G 293 A U
294 A G 297 A G 299 A A 300 A G 301 A G 302 A A
303 A U 304 A U 420 A U 421 A C 422 A G 505 A G
506 A U 512 A C 513 A A 532 A U 534 A C 562 A A
572 A A 573 A A 574 A G 610 A G 630 A G 631 A A
632 A C 883 A U 884 A G 886 A G 887 A A 889 A G
890 A G 906 A A 907 A A 915 A G 916 A U 997 A C
1045 A A 1046 A G 1207 A C 1208 A U 1211 A C 1397
A C 1403 A C 1404 A C 1490 A G 1491 A U 1510 A A
25 X A 26 X A 27 X
30 1.98 1.98 350.9 -1.00 -0.68 11.1 79 13 7 5 3 2 1 0  PAR 6 1 U 12 A U 13 A U 14 A G 15 A A 16 A A 53 A
A 55 A U 56 A G 57 A C 58 A A 59 A G 61 A U 62 A
C 63 A G 64 A G 68 A G 69 A G 70 A C 71 A C 72 A
G 73 A C 76 A G 78 A G 79 A U 90 A C 91 A C 92 A
U 96 A G 97 A G 98 A U 99 A C 100 A A 101 A U 340
A C 341 A A 349 A G 350 A G 351 A U 359 A A 360 A
G 361 A G 362 A G 505 A G 506 A U 534 A A 915 A C
1071 A G 1072 A A 1105 A G 1106 A G 1193 A U 1194
A C 1397 A C 1403 A C 1404 A G 1405 A U 1406 A C
1407 A A 1408 A C 1409 A G 1410 A C 1411 A C 1412
A A 1413 A U 1414 A G 1482 A A 1483 A C 1484 A U
1485 A G 1486 A G 1487 A G 1488 A C 1490 A G 1491
A A 25 X A 26 X A 27 X U 6 Y U 12 Y C 13 Y C 69 Y
A 70 Y G 71 Y C 72 Y C 74 Y C 75 Y

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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