 |
PDBsum entry 2wb2
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2wb2 calculated with MOLE 2.0
|
PDB id
|
|
|
|
2wb2
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
6 pores,
coloured by radius |
 |
6 pores,
coloured by radius
|
6 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
4.28 |
4.36 |
25.4 |
-1.36 |
-0.74 |
10.5 |
86 |
 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
 |
DA 3 C DC 5 C DG 6 C DG 7 C DG 10 C DA 12 C DG 13 C DG 14 C DT 15 C DA 2 D DC 3 D DC 4 D DT 5 D DC 7 D DG 8 D DA 9 D DC 10 D
|
 |
 |
2 |
 |
2.15 |
2.15 |
38.8 |
-0.90 |
-0.40 |
9.5 |
73 |
1 |
0 |
2 |
1 |
2 |
1 |
0 |
DA 3 C DC 5 C DG 6 C DG 7 C 64P 8 C Z 9 C DG 10 C DC 4 D DT 5 D DC 7 D DG 8 D DA 9 D DC 10 D DG 12 D DC 13 D DT 14 D DG 15 D
|
 |
3 |
 |
2.16 |
2.16 |
42.4 |
-1.08 |
-0.43 |
7.4 |
76 |
2 |
0 |
3 |
1 |
2 |
1 |
0 |
DG 6 C DG 7 C 64P 8 C Z 9 C DG 10 C DA 2 D DC 3 D DG 12 D DC 13 D DT 14 D DG 15 D
|
 |
4 |
 |
1.79 |
1.80 |
42.7 |
-1.01 |
-0.29 |
11.5 |
81 |
3 |
0 |
2 |
2 |
2 |
1 |
0 |
DC 2 C DG 7 C 64P 8 C Z 9 C DG 10 C DA 2 D DC 3 D DC 11 D DG 12 D
|
 |
5 |
 |
1.80 |
1.80 |
44.0 |
-0.71 |
-0.31 |
12.3 |
77 |
2 |
0 |
1 |
2 |
2 |
1 |
0 |
DC 2 C DA 3 C DC 5 C DG 6 C DG 7 C 64P 8 C Z 9 C DG 10 C DC 4 D DT 5 D DC 7 D DG 8 D DA 9 D DC 10 D DC 11 D DG 12 D
|
 |
6 |
 |
1.40 |
1.61 |
74.9 |
-1.49 |
-0.14 |
24.6 |
81 |
9 |
8 |
5 |
7 |
3 |
1 |
1 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |