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PDBsum entry 2wb2

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Top Page protein dna_rna ligands pores links
Pore analysis for: 2wb2 calculated with MOLE 2.0 PDB id
2wb2
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 4.28 4.36 25.4 -1.36 -0.74 10.5 86 2 0 1 0 0 0 0  DA 3 C DC 5 C DG 6 C DG 7 C DG 10 C DA 12 C DG 13
C DG 14 C DT 15 C DA 2 D DC 3 D DC 4 D DT 5 D DC
7 D DG 8 D DA 9 D DC 10 D
2 2.15 2.15 38.8 -0.90 -0.40 9.5 73 1 0 2 1 2 1 0  DA 3 C DC 5 C DG 6 C DG 7 C 64P 8 C Z 9 C DG 10 C
DC 4 D DT 5 D DC 7 D DG 8 D DA 9 D DC 10 D DG 12
D DC 13 D DT 14 D DG 15 D
3 2.16 2.16 42.4 -1.08 -0.43 7.4 76 2 0 3 1 2 1 0  DG 6 C DG 7 C 64P 8 C Z 9 C DG 10 C DA 2 D DC 3 D
DG 12 D DC 13 D DT 14 D DG 15 D
4 1.79 1.80 42.7 -1.01 -0.29 11.5 81 3 0 2 2 2 1 0  DC 2 C DG 7 C 64P 8 C Z 9 C DG 10 C DA 2 D DC 3 D
DC 11 D DG 12 D
5 1.80 1.80 44.0 -0.71 -0.31 12.3 77 2 0 1 2 2 1 0  DC 2 C DA 3 C DC 5 C DG 6 C DG 7 C 64P 8 C Z 9 C
DG 10 C DC 4 D DT 5 D DC 7 D DG 8 D DA 9 D DC 10
D DC 11 D DG 12 D
6 1.40 1.61 74.9 -1.49 -0.14 24.6 81 9 8 5 7 3 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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