PDBsum entry 2w3d Go to PDB code:  Tunnel analysis for: 2w3d calculated with MOLE 2.0 PDB id 2w3d Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 2.63 17.8 1.02 0.28 14.0 87 2 1 0 5 0 0 0  MSE 60 A MSE 86 A 2 2.39 4.25 18.6 0.04 0.44 8.5 76 2 0 0 5 4 2 0  MSE 152 B HEM 502 B 3 1.38 1.49 22.5 0.76 0.55 4.8 85 1 0 2 6 5 0 0  MSE 152 B HEM 502 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.