PDBsum entry 2vt4

Pore analysis for: 2vt4 calculated with

MOLE 2.0

PDB id

2vt4

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

13 pores, coloured by radius

13 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.51

1.52

25.3

0.11

0.08

7.7

64

1

2

1

2

4

0

3

P32 400 C

2

1.78

2.55

30.4

-2.36

-0.48

26.2

79

3

2

1

3

1

1

0

3

2.48

3.69

48.0

-1.47

0.00

31.0

84

3

3

2

7

1

0

0

4

1.21

2.13

58.3

0.05

0.23

15.0

80

3

4

4

8

4

1

1

SOG 404 C SOG 402 D

5

1.20

2.14

63.0

1.93

0.85

7.1

80

1

2

1

18

7

0

0

6

1.46

1.54

63.0

0.52

0.23

7.2

69

0

4

2

8

8

0

1

P32 400 A

7

2.45

3.18

65.4

2.22

0.95

6.9

76

2

2

2

18

8

1

1

SOG 404 C SOG 402 D

8

2.48

3.65

75.5

1.08

0.69

16.2

80

3

3

2

15

5

0

0

9

1.46

1.51

85.2

-0.28

0.08

15.7

80

3

6

3

10

5

1

1

P32 400 A SOG 404 B

10

2.40

4.82

89.0

-1.63

-0.47

25.6

81

3

8

4

5

2

2

1

SOG 404 C SOG 402 D

11

1.19

1.64

98.4

-0.66

0.02

21.1

84

4

8

2

10

3

1

0

SOG 404 C

12

2.43

3.08

110.5

-0.31

0.06

17.8

81

3

7

2

14

3

1

0

SOG 404 B

13

2.54

3.20

124.4

1.03

0.54

13.9

79

3

7

1

21

8

1

0

SOG 404 C

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.