 |
PDBsum entry 2vsq
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2vsq calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2vsq
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
26 pores,
coloured by radius |
|
26 pores,
coloured by radius
|
26 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.11 |
3.23 |
30.6 |
-1.68 |
-0.37 |
22.8 |
88 |
|
7 |
2 |
1 |
3 |
0 |
1 |
0 |
|
|
 |
|
2 |
 |
2.25 |
4.58 |
35.2 |
-0.26 |
-0.05 |
14.5 |
85 |
2 |
5 |
4 |
7 |
1 |
0 |
0 |
|
|
3 |
 |
2.29 |
2.45 |
36.5 |
-2.03 |
-0.35 |
23.6 |
76 |
6 |
7 |
1 |
2 |
2 |
4 |
0 |
|
|
4 |
 |
3.10 |
3.25 |
39.6 |
-1.80 |
-0.46 |
22.2 |
88 |
7 |
4 |
2 |
3 |
0 |
1 |
0 |
|
|
5 |
 |
2.41 |
2.41 |
47.1 |
-1.43 |
-0.47 |
20.5 |
79 |
5 |
8 |
2 |
4 |
2 |
6 |
0 |
|
|
6 |
 |
2.32 |
2.47 |
47.5 |
-2.07 |
-0.41 |
23.0 |
79 |
6 |
9 |
2 |
2 |
2 |
4 |
0 |
|
|
7 |
 |
2.38 |
2.38 |
51.1 |
-1.27 |
-0.38 |
20.8 |
82 |
6 |
7 |
3 |
3 |
1 |
2 |
0 |
|
|
8 |
 |
2.03 |
3.85 |
56.4 |
-0.80 |
0.11 |
13.8 |
72 |
5 |
3 |
5 |
8 |
5 |
2 |
0 |
|
|
9 |
 |
1.28 |
1.99 |
58.0 |
-0.73 |
-0.16 |
22.1 |
81 |
5 |
4 |
1 |
4 |
1 |
1 |
0 |
|
|
10 |
 |
1.59 |
1.59 |
60.6 |
-2.38 |
-0.48 |
27.3 |
82 |
8 |
6 |
6 |
2 |
2 |
3 |
0 |
|
|
11 |
 |
1.58 |
1.58 |
65.2 |
-2.34 |
-0.53 |
24.9 |
81 |
9 |
5 |
6 |
2 |
1 |
1 |
0 |
|
|
12 |
|
1.60 |
1.60 |
67.4 |
-2.23 |
-0.49 |
26.0 |
79 |
9 |
9 |
4 |
2 |
3 |
1 |
0 |
|
|
13 |
|
2.00 |
2.34 |
68.9 |
-1.12 |
-0.38 |
15.0 |
77 |
4 |
7 |
9 |
8 |
1 |
5 |
0 |
|
|
14 |
|
2.08 |
2.39 |
72.6 |
-1.20 |
-0.44 |
17.2 |
80 |
4 |
10 |
8 |
11 |
1 |
8 |
0 |
|
|
15 |
|
2.05 |
2.33 |
79.4 |
-1.43 |
-0.32 |
17.1 |
76 |
5 |
5 |
8 |
7 |
2 |
7 |
0 |
|
|
16 |
|
2.49 |
2.83 |
81.8 |
-1.24 |
-0.16 |
20.0 |
82 |
9 |
10 |
6 |
11 |
4 |
3 |
0 |
|
|
17 |
|
1.58 |
1.58 |
82.5 |
-2.43 |
-0.50 |
28.9 |
81 |
11 |
7 |
6 |
2 |
2 |
3 |
0 |
|
|
18 |
|
2.00 |
2.27 |
91.8 |
-1.53 |
-0.38 |
16.6 |
78 |
5 |
8 |
9 |
7 |
2 |
7 |
0 |
|
|
19 |
|
2.02 |
3.68 |
93.2 |
-0.89 |
-0.10 |
15.9 |
79 |
8 |
5 |
7 |
10 |
5 |
2 |
0 |
|
|
20 |
|
2.04 |
3.84 |
94.1 |
-1.16 |
-0.25 |
13.4 |
80 |
6 |
5 |
13 |
13 |
2 |
5 |
0 |
|
|
21 |
|
1.57 |
1.57 |
95.2 |
-1.42 |
-0.45 |
16.1 |
80 |
6 |
6 |
11 |
7 |
2 |
4 |
0 |
|
|
22 |
|
1.57 |
1.57 |
98.1 |
-1.47 |
-0.23 |
22.5 |
82 |
11 |
10 |
8 |
9 |
5 |
0 |
0 |
|
|
23 |
|
2.20 |
2.22 |
118.4 |
-1.03 |
-0.25 |
16.5 |
82 |
11 |
14 |
7 |
13 |
6 |
5 |
0 |
|
|
24 |
|
2.04 |
2.39 |
121.0 |
-0.73 |
-0.14 |
14.6 |
79 |
7 |
14 |
10 |
17 |
6 |
7 |
0 |
|
|
25 |
|
1.46 |
2.15 |
174.8 |
-1.20 |
-0.18 |
17.6 |
77 |
12 |
11 |
12 |
19 |
9 |
8 |
0 |
|
 |
26 |
|
1.55 |
2.31 |
197.8 |
-1.30 |
-0.22 |
18.8 |
78 |
14 |
11 |
15 |
19 |
10 |
5 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program