 |
PDBsum entry 2vs7
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2vs7 calculated with MOLE 2.0
|
PDB id
|
|
|
|
2vs7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
3 pores,
coloured by radius |
 |
4 pores,
coloured by radius
|
4 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.15 |
2.15 |
28.6 |
-0.88 |
-0.38 |
13.9 |
83 |
 |
2 |
3 |
3 |
2 |
1 |
0 |
0 |
 |
DG 21 B DC 22 B DG 23 B DC 24 B DG 25 B
|
 |
 |
2 |
 |
1.38 |
1.38 |
28.9 |
-0.74 |
-0.57 |
14.3 |
89 |
3 |
1 |
0 |
1 |
0 |
0 |
0 |
DC 3 B DT 4 B DT 5 B DG 6 B DC 7 B DC 8 B DG 19 C DA 22 C DG 23 C DG 24 C DC 25 C
|
 |
3 |
 |
1.38 |
1.38 |
30.3 |
-0.66 |
-0.77 |
6.8 |
72 |
2 |
0 |
0 |
0 |
0 |
0 |
0 |
DG 11 B DT 12 B DA 13 B DA 14 B DG 15 B DT 16 B DT 17 B DT 12 C DT 13 C DA 14 C DC 15 C DC 16 C DC 17 C
|
 |
4 |
 |
1.33 |
1.33 |
65.0 |
-1.12 |
-0.72 |
12.7 |
75 |
3 |
0 |
0 |
0 |
0 |
0 |
0 |
DT 4 H DT 5 H DG 10 H DG 11 H DT 12 H DA 13 H DA 14 H DG 15 H DT 16 H DT 17 H DT 12 I DT 13 I DA 14 I DC 15 I DC 16 I DC 17 I DG 18 I DG 19 I
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |