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PDBsum entry 2vs7

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Top Page protein dna_rna ligands metals pores links
Pore analysis for: 2vs7 calculated with MOLE 2.0 PDB id
2vs7
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 4 pores, coloured by radius 4 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.15 2.15 28.6 -0.88 -0.38 13.9 83 2 3 3 2 1 0 0  DG 21 B DC 22 B DG 23 B DC 24 B DG 25 B
2 1.38 1.38 28.9 -0.74 -0.57 14.3 89 3 1 0 1 0 0 0  DC 3 B DT 4 B DT 5 B DG 6 B DC 7 B DC 8 B DG 19 C
DA 22 C DG 23 C DG 24 C DC 25 C
3 1.38 1.38 30.3 -0.66 -0.77 6.8 72 2 0 0 0 0 0 0  DG 11 B DT 12 B DA 13 B DA 14 B DG 15 B DT 16 B
DT 17 B DT 12 C DT 13 C DA 14 C DC 15 C DC 16 C
DC 17 C
4 1.33 1.33 65.0 -1.12 -0.72 12.7 75 3 0 0 0 0 0 0  DT 4 H DT 5 H DG 10 H DG 11 H DT 12 H DA 13 H DA
14 H DG 15 H DT 16 H DT 17 H DT 12 I DT 13 I DA
14 I DC 15 I DC 16 I DC 17 I DG 18 I DG 19 I

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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