 |
PDBsum entry 2vs3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2vs3 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2vs3
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.12 |
1.27 |
26.7 |
-0.51 |
-0.04 |
8.5 |
80 |
|
1 |
2 |
2 |
2 |
3 |
1 |
0 |
|
UDP 401 B
|
 |
|
2 |
 |
1.17 |
1.16 |
27.4 |
0.44 |
0.22 |
13.1 |
86 |
3 |
2 |
0 |
4 |
1 |
0 |
0 |
UDP 401 B
|
|
3 |
 |
1.12 |
1.27 |
29.7 |
-1.75 |
0.03 |
20.5 |
70 |
4 |
2 |
2 |
1 |
6 |
0 |
0 |
UDP 401 B NDG 1 D GAL 2 D
|
|
4 |
 |
1.47 |
1.63 |
21.5 |
0.34 |
0.01 |
4.1 |
89 |
2 |
0 |
1 |
3 |
0 |
2 |
0 |
|
|
5 |
 |
1.70 |
2.31 |
16.1 |
-0.57 |
0.01 |
11.1 |
62 |
3 |
0 |
0 |
3 |
2 |
0 |
0 |
|
 |
6 |
 |
1.25 |
1.47 |
16.0 |
-2.17 |
-0.62 |
32.2 |
84 |
4 |
3 |
0 |
1 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program