PDBsum entry 2vrk Go to PDB code:  Tunnel analysis for: 2vrk calculated with MOLE 2.0 PDB id 2vrk Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.25 1.55 16.0 0.02 0.40 8.1 68 1 2 0 2 3 1 1  MSE 114 B 2 1.21 1.50 18.3 0.04 0.20 7.7 68 0 1 1 3 3 1 1  MSE 114 B MSE 115 B 3 1.19 1.34 26.4 -0.78 -0.08 11.4 87 4 1 2 4 2 0 0  MSE 342 B PO4 1498 B 4 1.27 1.27 17.6 1.88 0.49 5.9 93 2 0 1 7 0 0 0   5 1.16 1.29 16.8 -0.20 -0.02 8.4 88 2 1 2 4 2 0 0  MSE 342 C 6 1.09 1.68 18.4 1.61 0.45 1.6 67 0 0 0 5 2 1 0  MSE 486 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.