 |
PDBsum entry 2vr5
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2vr5 calculated with MOLE 2.0
|
PDB id
|
|
|
|
2vr5
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
4 pores,
coloured by radius |
 |
5 pores,
coloured by radius
|
5 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.73 |
2.98 |
31.9 |
-1.46 |
-0.55 |
17.2 |
76 |
 |
3 |
2 |
2 |
1 |
1 |
2 |
0 |
 |
|
 |
 |
2 |
 |
1.12 |
1.12 |
92.5 |
-0.57 |
-0.18 |
6.7 |
81 |
3 |
3 |
9 |
10 |
3 |
5 |
0 |
|
 |
3 |
 |
1.16 |
1.35 |
93.9 |
-1.35 |
-0.24 |
19.1 |
81 |
7 |
4 |
2 |
6 |
3 |
1 |
0 |
|
 |
4 |
 |
1.16 |
1.15 |
97.7 |
-0.38 |
-0.10 |
8.4 |
86 |
2 |
5 |
12 |
10 |
2 |
3 |
0 |
|
 |
5 |
 |
1.27 |
1.70 |
105.2 |
-1.09 |
-0.18 |
14.0 |
77 |
6 |
6 |
10 |
9 |
4 |
5 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |