PDBsum entry 2vqe Go to PDB code:  Tunnel analysis for: 2vqe calculated with MOLE 2.0 PDB id 2vqe Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.26 58.3 -0.51 -0.73 5.8 89 0 2 0 1 1 0 0  G 654 A A 655 A C 656 A C 744 A C 745 A G 755 A C 756 A G 823 A C 824 A G 825 A C 826 A U 827 A U 850 A G 851 A G 852 A G 876 A C 877 A 2 1.26 1.26 61.0 -0.52 -0.81 4.8 100 0 1 0 0 0 0 0  U 652 A A 653 A G 654 A A 655 A C 656 A C 744 A C 745 A C 747 A C 748 A C 749 A G 750 A G 752 A G 755 A C 756 A G 823 A C 824 A G 825 A C 826 A G 876 A C 877 A MG 1633 A 3 1.26 1.26 67.9 -0.49 -0.80 4.5 100 0 1 0 0 0 0 0  G 654 A A 655 A C 656 A U 723 A G 724 A G 725 A C 726 A G 727 A A 728 A A 729 A G 731 A U 743 A C 744 A G 755 A C 756 A G 818 A C 822 A G 823 A C 824 A G 825 A C 826 A G 853 A G 854 A G 855 A C 856 A G 876 A C 877 A U 1528 A MG 1628 A K 1849 A 4 1.26 1.26 74.2 -0.50 -0.81 4.6 100 0 1 0 0 0 0 0  G 576 A G 577 A C 578 A G 579 A U 580 A G 581 A G 654 A A 655 A C 656 A U 743 A G 755 A C 756 A U 757 A G 758 A A 759 A G 761 A C 762 A G 763 A C 764 A G 765 A C 812 A C 822 A G 823 A C 824 A G 825 A C 826 A G 876 A C 877 A C 897 A G 898 A 5 1.28 1.28 74.2 -1.23 -0.75 13.5 84 5 2 0 0 0 1 0  U 580 A G 581 A G 587 A C 647 A A 648 A G 654 A A 655 A C 656 A U 743 A G 755 A C 756 A U 757 A G 758 A G 823 A C 824 A G 825 A C 826 A G 876 A C 877 A 6 1.27 1.27 76.7 -1.20 -0.73 12.9 82 4 2 0 0 0 1 0  G 654 A A 655 A C 656 A G 657 A G 658 A U 659 A G 660 A G 661 A G 662 A U 743 A C 744 A C 745 A G 755 A C 756 A G 823 A C 824 A G 825 A C 826 A G 876 A C 877 A MG 1614 A MG 1623 A K 1815 A K 1839 A 7 1.30 1.30 105.0 -0.58 -0.61 9.6 85 4 2 0 4 0 1 0  U 5 A G 299 A A 300 A U 565 A G 567 A G 568 A C 569 A G 654 A A 655 A C 656 A U 743 A C 744 A G 755 A C 756 A G 821 A C 822 A G 823 A C 824 A G 825 A C 826 A G 853 A U 871 A A 872 A A 873 A G 874 A C 875 A G 876 A C 877 A K 1830 A 8 1.32 1.32 116.7 -1.02 -0.70 11.7 80 5 5 2 0 2 1 0  G 568 A C 569 A G 654 A A 655 A C 656 A U 743 A C 744 A G 755 A C 756 A G 821 A C 822 A G 823 A C 824 A G 825 A C 826 A G 853 A G 861 A C 862 A U 871 A A 872 A A 873 A G 874 A C 875 A G 876 A C 877 A U 1078 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.