 |
PDBsum entry 2vq7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2vq7 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2vq7
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
7 pores,
coloured by radius |
|
7 pores,
coloured by radius
|
7 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.31 |
1.65 |
29.7 |
-2.05 |
-0.35 |
24.0 |
89 |
|
6 |
3 |
3 |
2 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
1.42 |
2.81 |
52.4 |
-2.31 |
-0.40 |
27.2 |
88 |
6 |
4 |
4 |
1 |
2 |
0 |
0 |
EPE 1454 A EPE 1455 A
|
|
3 |
 |
1.33 |
1.90 |
60.3 |
-2.31 |
-0.48 |
24.7 |
81 |
7 |
8 |
3 |
3 |
2 |
4 |
0 |
FAD 1451 D
|
|
4 |
 |
1.47 |
2.77 |
65.2 |
-2.70 |
-0.59 |
35.2 |
90 |
5 |
8 |
3 |
1 |
0 |
0 |
0 |
|
|
5 |
 |
1.33 |
1.90 |
94.8 |
-1.63 |
-0.33 |
15.7 |
78 |
8 |
8 |
9 |
5 |
9 |
5 |
0 |
FAD 1451 A NAP 1452 A FAD 1451 D
|
|
6 |
 |
1.38 |
1.92 |
101.1 |
-1.66 |
-0.37 |
16.9 |
81 |
8 |
9 |
9 |
4 |
9 |
1 |
0 |
FAD 1451 A NAP 1452 A EPE 1454 A EPE 1455 A
|
 |
7 |
 |
1.35 |
1.90 |
116.0 |
-1.82 |
-0.36 |
16.6 |
81 |
9 |
8 |
11 |
4 |
10 |
1 |
0 |
EPE 1454 A EPE 1455 A FAD 1451 D NAP 1452 D
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program