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PDBsum entry 2vpy
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Pore analysis for: 2vpy calculated with  MOLE 2.0
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PDB id
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2vpy
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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14 pores,
coloured by radius |
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22 pores,
coloured by radius
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22 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.07 |
2.23 |
26.0 |
-0.96 |
-0.42 |
13.4 |
86 |
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3 |
2 |
2 |
3 |
0 |
2 |
0 |
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2 |
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1.50 |
1.62 |
28.6 |
-1.54 |
-0.32 |
22.7 |
67 |
3 |
4 |
0 |
2 |
2 |
3 |
0 |
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3 |
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1.36 |
1.47 |
46.5 |
-0.54 |
-0.24 |
14.4 |
74 |
2 |
6 |
1 |
3 |
3 |
0 |
0 |
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4 |
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1.98 |
2.31 |
55.4 |
-1.45 |
-0.62 |
20.4 |
79 |
7 |
2 |
4 |
3 |
2 |
3 |
0 |
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5 |
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2.56 |
2.73 |
58.2 |
-2.14 |
-0.57 |
23.0 |
77 |
6 |
5 |
2 |
3 |
1 |
1 |
0 |
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6 |
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2.05 |
2.36 |
65.8 |
-1.45 |
-0.57 |
15.5 |
74 |
4 |
6 |
4 |
4 |
1 |
6 |
0 |
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7 |
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2.16 |
2.65 |
72.8 |
-1.47 |
-0.63 |
19.2 |
81 |
7 |
3 |
4 |
4 |
2 |
2 |
0 |
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8 |
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1.88 |
3.53 |
79.4 |
-1.15 |
-0.39 |
13.8 |
76 |
7 |
2 |
3 |
5 |
2 |
5 |
0 |
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9 |
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2.10 |
2.20 |
85.3 |
-1.65 |
-0.55 |
16.3 |
77 |
8 |
5 |
5 |
6 |
0 |
5 |
0 |
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10 |
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1.18 |
1.90 |
88.6 |
-1.48 |
-0.18 |
22.4 |
78 |
13 |
8 |
2 |
5 |
4 |
5 |
1 |
MGD 1765 A MGD 1766 A MO 1767 A
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11 |
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1.74 |
1.80 |
119.4 |
-1.25 |
-0.27 |
19.8 |
77 |
9 |
6 |
5 |
9 |
2 |
5 |
1 |
PCI 1252 C
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12 |
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1.42 |
1.57 |
125.5 |
-0.89 |
-0.20 |
16.3 |
73 |
10 |
2 |
4 |
8 |
1 |
7 |
1 |
PCI 1252 C
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13 |
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1.33 |
2.64 |
137.3 |
-0.98 |
-0.22 |
18.3 |
78 |
16 |
7 |
8 |
10 |
5 |
6 |
2 |
MGD 1765 A MGD 1766 A MO 1767 A PCI 1252 C
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14 |
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1.40 |
1.55 |
134.0 |
-1.35 |
-0.36 |
19.8 |
73 |
9 |
5 |
1 |
6 |
1 |
7 |
0 |
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15 |
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1.43 |
1.53 |
149.6 |
-0.81 |
-0.20 |
16.9 |
74 |
14 |
9 |
7 |
16 |
5 |
5 |
1 |
PCI 1252 C
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16 |
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1.77 |
1.80 |
158.5 |
-1.05 |
-0.27 |
19.0 |
76 |
16 |
6 |
6 |
12 |
4 |
6 |
1 |
PCI 1252 C
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17 |
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1.25 |
2.40 |
162.8 |
-0.98 |
-0.23 |
19.5 |
75 |
19 |
12 |
7 |
13 |
8 |
5 |
1 |
MGD 1765 A MGD 1766 A MO 1767 A
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18 |
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1.27 |
2.28 |
171.3 |
-1.55 |
-0.45 |
24.0 |
83 |
22 |
10 |
10 |
7 |
5 |
2 |
1 |
MGD 1765 A MGD 1766 A MO 1767 A
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19 |
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1.35 |
2.42 |
173.3 |
-1.34 |
-0.48 |
19.7 |
79 |
17 |
14 |
10 |
9 |
6 |
8 |
1 |
MGD 1765 A MGD 1766 A MO 1767 A
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20 |
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1.26 |
1.21 |
182.0 |
-0.89 |
-0.23 |
17.5 |
72 |
17 |
9 |
5 |
13 |
4 |
8 |
0 |
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21 |
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1.40 |
1.51 |
178.6 |
-1.14 |
-0.31 |
19.4 |
73 |
17 |
5 |
2 |
9 |
3 |
8 |
0 |
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22 |
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1.30 |
2.12 |
56.8 |
-2.16 |
-0.25 |
28.1 |
79 |
12 |
4 |
3 |
2 |
5 |
0 |
1 |
MGD 1766 E MO 1767 E
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program