 |
PDBsum entry 2vps
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 2vps calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2vps
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.22 |
2.55 |
17.7 |
-1.70 |
-0.53 |
11.0 |
72 |
|
1 |
1 |
2 |
2 |
3 |
0 |
0 |
|
|
 |
|
2 |
 |
1.15 |
1.23 |
22.8 |
-1.13 |
-0.39 |
19.6 |
75 |
1 |
4 |
1 |
3 |
3 |
0 |
0 |
|
|
3 |
 |
1.12 |
1.12 |
25.8 |
-0.65 |
-0.55 |
10.9 |
87 |
0 |
3 |
3 |
4 |
1 |
0 |
0 |
BR 1658 A
|
|
4 |
 |
1.13 |
1.22 |
41.1 |
-1.01 |
-0.41 |
18.6 |
77 |
4 |
3 |
2 |
7 |
2 |
0 |
0 |
BR 1658 A
|
|
5 |
 |
1.13 |
1.96 |
17.5 |
0.37 |
0.09 |
15.5 |
69 |
2 |
1 |
0 |
5 |
0 |
0 |
0 |
|
 |
6 |
 |
1.06 |
2.07 |
18.8 |
-0.93 |
-0.48 |
11.1 |
82 |
1 |
1 |
2 |
4 |
1 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program