 |
PDBsum entry 2vpm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2vpm calculated with  MOLE 2.0
|
PDB id
|
|
|
|
2vpm
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
11 pores,
coloured by radius |
|
11 pores,
coloured by radius
|
11 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.24 |
2.99 |
28.0 |
-0.88 |
-0.35 |
18.8 |
84 |
|
2 |
6 |
3 |
2 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
2.15 |
3.56 |
29.5 |
-1.79 |
-0.25 |
22.6 |
72 |
4 |
2 |
2 |
1 |
4 |
1 |
0 |
|
|
3 |
 |
1.54 |
1.54 |
37.1 |
-1.99 |
-0.44 |
23.0 |
83 |
5 |
5 |
2 |
3 |
1 |
1 |
0 |
|
|
4 |
 |
1.24 |
1.41 |
46.0 |
-0.44 |
0.08 |
13.8 |
77 |
6 |
3 |
2 |
5 |
7 |
1 |
0 |
|
|
5 |
 |
1.34 |
1.35 |
48.0 |
-1.85 |
-0.38 |
16.8 |
73 |
5 |
2 |
4 |
4 |
3 |
1 |
0 |
|
|
6 |
 |
2.12 |
2.09 |
48.6 |
-1.31 |
-0.10 |
19.4 |
85 |
7 |
5 |
5 |
6 |
2 |
1 |
0 |
|
|
7 |
 |
1.25 |
1.42 |
49.9 |
-0.90 |
0.04 |
11.5 |
82 |
6 |
2 |
4 |
5 |
5 |
1 |
0 |
|
|
8 |
 |
2.16 |
2.13 |
55.7 |
-1.16 |
-0.17 |
22.9 |
78 |
8 |
6 |
3 |
7 |
5 |
2 |
0 |
|
|
9 |
 |
1.33 |
1.35 |
62.7 |
-1.58 |
-0.48 |
20.8 |
81 |
5 |
6 |
3 |
9 |
1 |
1 |
0 |
|
|
10 |
 |
1.26 |
1.79 |
143.0 |
-0.62 |
-0.12 |
16.2 |
81 |
12 |
10 |
9 |
17 |
8 |
3 |
1 |
|
 |
11 |
 |
1.20 |
1.68 |
167.5 |
-1.40 |
-0.35 |
17.2 |
80 |
11 |
13 |
9 |
10 |
6 |
3 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program