PDBsum entry 2vna

Tunnel analysis for: 2vna calculated with

MOLE 2.0

PDB id

2vna

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.03

2.10

21.4

-0.46

-0.07

6.1

87

3

0

5

3

1

1

0

NAP 801 A

2

1.13

2.60

34.9

-0.02

0.37

8.4

77

2

2

2

7

2

2

2

NAP 801 A

3

1.59

3.42

35.2

0.21

0.38

7.8

72

2

1

2

6

3

2

2

NAP 801 A

4

1.96

2.86

36.2

0.10

0.36

9.5

77

2

2

3

7

2

2

2

NAP 801 A

5

1.96

2.89

36.6

-0.33

0.16

8.0

75

2

3

3

6

3

2

3

NAP 801 A

6

1.55

1.52

45.3

0.59

0.31

7.1

74

1

3

2

10

3

2

2

NAP 801 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.