PDBsum entry 2vix

Pore analysis for: 2vix calculated with

MOLE 2.0

PDB id

2vix

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

6 pores, coloured by radius

6 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.37

2.37

27.6

-1.19

-0.44

12.7

89

1

3

4

2

1

1

0

MLY 155 B MLY 244 B MLY 112 C

2

2.37

2.37

32.3

-1.05

-0.63

16.5

86

1

5

3

3

0

1

1

MLY 155 B GOL 1356 B

3

2.15

3.88

44.5

-0.40

-0.05

11.0

83

0

5

3

6

2

0

0

MLY 112 B MLY 116 B GOL 1356 B MLY 155 C

4

2.04

3.87

62.4

-0.47

-0.19

9.5

91

1

5

8

7

3

1

0

MLY 112 B GOL 1356 B MLY 116 C MLY 155 C

5

2.05

2.67

78.0

-0.95

-0.37

14.3

87

1

7

8

6

2

2

1

MLY 112 B MLY 155 B MLY 144 C MLY 155 C

6

2.00

2.12

40.1

-0.77

-0.16

17.0

84

1

3

4

6

2

0

0

MLY 173 A MLY 175 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.