PDBsum entry 2vix Go to PDB code:  Tunnel analysis for: 2vix calculated with MOLE 2.0 PDB id 2vix Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 1.44 16.7 0.03 -0.20 11.1 88 1 2 2 3 0 0 1  MLY 155 B 2 1.27 1.44 26.8 -0.06 -0.21 8.9 88 2 2 2 4 0 1 1  MLY 155 B 3 1.27 1.43 32.3 -0.61 -0.25 11.2 88 2 2 4 4 1 1 1  MLY 155 B MLY 244 B MLY 112 C 4 1.37 1.92 24.5 2.52 0.68 3.5 87 0 2 2 8 0 0 0   5 1.37 1.83 26.5 1.87 0.62 3.5 82 0 2 2 8 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.