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PDBsum entry 2ve7

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Top Page protein ligands Protein-protein interface(s) links
Cell cycle PDB id
2ve7
Contents
Protein chains
246 a.a.
303 a.a.
219 a.a.
242 a.a.
Ligands
GOL ×2
IPH ×2
Waters ×22

References listed in PDB file
Key reference
Title Implications for kinetochore-Microtubule attachment from the structure of an engineered ndc80 complex.
Authors C.Ciferri, S.Pasqualato, E.Screpanti, G.Varetti, S.Santaguida, G.Dos reis, A.Maiolica, J.Polka, J.G.De luca, P.De wulf, M.Salek, J.Rappsilber, C.A.Moores, E.D.Salmon, A.Musacchio.
Ref. Cell, 2008, 133, 427-439. [DOI no: 10.1016/j.cell.2008.03.020]
PubMed id 18455984
Abstract
Kinetochores are proteinaceous assemblies that mediate the interaction of chromosomes with the mitotic spindle. The 180 kDa Ndc80 complex is a direct point of contact between kinetochores and microtubules. Its four subunits contain coiled coils and form an elongated rod structure with functional globular domains at either end. We crystallized an engineered "bonsai" Ndc80 complex containing a shortened rod domain but retaining the globular domains required for kinetochore localization and microtubule binding. The structure reveals a microtubule-binding interface containing a pair of tightly interacting calponin-homology (CH) domains with a previously unknown arrangement. The interaction with microtubules is cooperative and predominantly electrostatic. It involves positive charges in the CH domains and in the N-terminal tail of the Ndc80 subunit and negative charges in tubulin C-terminal tails and is regulated by the Aurora B kinase. We discuss our results with reference to current models of kinetochore-microtubule attachment and centromere organization.
Figure 3.
Figure 3. Organization of the CH Domains in the Ndc80-Nuf2 Subcomplex
(A) Topology diagram of Ndc80 and Nuf2. The CH domain is contained between the αA and αG helices.
(B) Two views of the superposition of the CH domains of Ndc80 and Nuf2. Note the conspicuous bending of the tips of the Nuf2 αE helix.
(C) Structure-based sequence alignment of the CH domains of Ndc80, Nuf2, and EB1. The αA, αC, αE, and αG helices are contoured. Residues highlighted in gray have their side chains buried in the hydrophobic core of the CH domain.
(D) General view and closeups of the interface of Ndc80 and Nuf2.
Figure 6.
Figure 6. Models of Ndc80 and Microtubule-Kinetochore Interaction
(A–D) Models of the Ndc80-microtubule interaction. A yellow patch on tubulin in (A) and (B) represents a hypothetical binding site for the Ndc80 N-terminal tail. In (C), it is hypothesized that the N-terminal tail binds to the negatively charged patch on Nuf2, shown in Figure 4B.
(E) The Ndc80^bonsai complex.
(F) Summary of crosslinking analysis (Maiolica et al., 2007). Connected black dots mark crosslinked residues. Numbers in hexagons define distances between “milestones,” such as subsequent crosslinked residues or pairs of interacting residues identified in the structure.
(G) Model of the full-length Ndc80 complex showing the predicted break in the coiled-coil region.
(H) Implications from the structure of the Ndc80 complex on the organization of the microtubule-kinetochore interface.
The above figures are reprinted by permission from Cell Press: Cell (2008, 133, 427-439) copyright 2008.
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