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PDBsum entry 2vdp
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Cell adhesion/immune system
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PDB id
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2vdp
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Contents |
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452 a.a.
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455 a.a.
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219 a.a.
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214 a.a.
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Generate full PROCHECK analyses
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PROCHECK summary for 2vdp
Ramachandran plot
PROCHECK statistics
1. Ramachandran Plot statistics
No. of
residues %-tage
------ ------
Most favoured regions [A,B,L] 999 87.0%*
Additional allowed regions [a,b,l,p] 141 12.3%
Generously allowed regions [~a,~b,~l,~p] 4 0.3%
Disallowed regions [XX] 4 0.3%*
---- ------
Non-glycine and non-proline residues 1148 100.0%
End-residues (excl. Gly and Pro) 10
Glycine residues 114
Proline residues 76
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Total number of residues 1348
Based on an analysis of 118 structures of resolution of at least 2.0 Angstroms and R-factor no greater than 20.0 a good
quality model would be expected to have over 90% in the most favoured regions [A,B,L].
2. G-Factors
Average
Parameter Score Score
--------- ----- -----
Dihedral angles:-
Phi-psi distribution -0.43
Chi1-chi2 distribution -0.02
Chi1 only 0.06
Chi3 & chi4 0.56
Omega -0.47
-0.24
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Main-chain covalent forces:-
Main-chain bond lengths 0.65
Main-chain bond angles 0.54
0.58
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OVERALL AVERAGE 0.09
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G-factors provide a measure of how unusual, or out-of-the-ordinary, a property is.
Values below -0.5* - unusual
Values below -1.0** - highly unusual
Important note: The main-chain
bond-lengths and bond angles are compared with
the Engh & Huber (1991) ideal values derived
from small-molecule data. Therefore, structures
refined using different restraints may show
apparently large deviations from normality.
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