PDBsum entry 2vdp Go to PDB code:  Tunnel analysis for: 2vdp calculated with MOLE 2.0 PDB id 2vdp Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.44 1.61 17.8 -0.50 -0.57 4.7 95 1 0 5 1 1 0 0   2 1.17 1.60 17.9 0.51 0.13 3.9 89 1 0 3 7 1 0 0   3 1.17 1.60 18.0 1.04 0.29 3.5 90 1 0 3 8 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.