PDBsum entry 2vdd Go to PDB code:  Pore analysis for: 2vdd calculated with MOLE 2.0 PDB id 2vdd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.61 3.94 25.7 -1.14 -0.33 16.8 89 2 2 2 4 0 0 0   2 1.56 1.84 43.4 -1.09 -0.43 19.1 94 1 6 4 6 0 0 0   3 1.34 1.41 56.0 -0.95 -0.47 9.7 84 2 3 7 7 0 2 0   4 1.27 1.29 56.4 -2.27 -0.68 3.2 103 1 0 20 3 0 0 0   5 2.42 3.01 57.2 -2.05 -0.65 21.8 97 0 9 12 4 0 0 0   6 1.28 1.29 59.3 -1.54 -0.59 2.9 101 1 0 19 4 0 0 0   7 1.13 2.52 60.6 -0.18 -0.09 4.6 88 1 2 12 9 1 0 0   8 1.35 1.34 61.5 -1.67 -0.59 17.7 96 0 8 12 5 0 0 0   9 1.32 1.43 64.8 -1.80 -0.58 10.3 93 3 3 14 5 0 1 0   10 1.32 1.44 67.4 -2.20 -0.66 6.3 98 2 1 21 4 0 1 0   11 1.28 1.31 67.9 -1.87 -0.62 10.7 96 2 3 16 5 0 0 0   12 1.67 1.86 73.7 -1.90 -0.55 16.6 84 6 6 12 6 5 1 0   13 1.19 1.48 76.4 -0.77 -0.28 4.1 88 1 2 16 10 1 0 0   14 1.64 1.68 76.5 -2.07 -0.53 19.2 85 6 7 11 6 5 0 0   15 1.30 1.31 83.3 -1.89 -0.59 11.2 94 3 4 18 5 1 0 0   16 1.17 2.48 88.0 -1.17 -0.34 9.8 87 2 5 16 11 1 0 0   17 1.39 1.28 104.5 -2.37 -0.70 14.9 89 8 7 26 7 0 2 0   18 1.30 1.28 107.4 -2.45 -0.69 15.9 90 8 6 26 6 0 0 0   19 1.32 1.41 114.0 -2.47 -0.70 16.2 89 9 7 28 7 0 3 0   20 1.20 1.48 115.9 -1.95 -0.52 16.6 83 8 7 21 12 1 1 0   21 1.36 1.44 116.9 -2.52 -0.69 17.0 89 9 6 28 6 0 1 0   22 1.37 1.46 120.2 -2.46 -0.69 15.5 88 9 8 29 7 1 2 0   23 1.26 1.41 123.1 -2.44 -0.68 16.2 89 9 7 29 6 1 0 0   24 1.32 1.30 123.8 -2.40 -0.55 18.8 88 13 11 32 7 4 0 0   25 1.66 1.73 123.7 -2.58 -0.71 19.5 89 7 16 28 8 0 2 0   26 1.28 1.38 126.0 -2.58 -0.72 15.3 88 8 10 29 8 0 3 0   27 1.59 1.69 126.6 -2.60 -0.71 19.8 90 7 14 28 7 0 0 0   28 1.44 1.54 126.7 -2.63 -0.71 16.2 87 8 10 29 7 1 2 0   29 2.37 2.81 133.7 -2.55 -0.59 18.8 88 12 11 33 6 5 0 0   30 2.98 4.68 143.0 -2.53 -0.59 21.6 88 12 18 34 8 5 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.