PDBsum entry 2vba Go to PDB code:  Tunnel analysis for: 2vba calculated with MOLE 2.0 PDB id 2vba Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.16 1.37 35.2 0.45 -0.14 3.4 82 0 1 2 11 3 1 1  P4T 1405 A 2 1.18 1.36 35.9 0.56 -0.08 3.4 82 0 1 2 10 3 1 1  P4T 1405 A 3 1.19 2.06 16.5 -0.01 -0.09 8.5 82 1 1 1 5 1 0 0   4 1.64 1.96 17.9 -1.02 -0.04 18.2 80 3 1 2 3 2 0 0   5 1.21 1.92 19.0 0.17 -0.01 6.7 83 2 0 1 5 1 0 0   6 1.63 1.95 19.9 -0.98 0.03 18.4 78 3 1 2 3 2 1 0   7 1.18 1.57 16.5 -0.05 -0.05 7.4 83 2 0 1 5 1 0 0   8 1.18 1.68 19.2 0.30 -0.09 2.9 84 1 0 1 5 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.