PDBsum entry 2vb9 Go to PDB code:  Tunnel analysis for: 2vb9 calculated with MOLE 2.0 PDB id 2vb9 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.40 1.81 33.4 -0.62 -0.01 14.4 82 2 1 2 5 2 0 0   2 1.41 1.81 40.8 -1.23 -0.17 19.4 79 4 4 2 5 2 0 0   3 1.17 1.40 34.7 0.64 -0.06 2.9 81 0 1 2 9 3 1 1   4 1.49 3.72 18.6 -1.14 -0.11 18.2 80 3 1 2 3 2 0 0   5 1.21 1.26 20.6 0.04 -0.11 8.6 85 1 1 0 4 1 2 0   6 1.54 1.78 20.9 -0.57 -0.35 8.0 84 1 1 1 3 2 2 0   7 1.28 1.32 21.7 -0.07 -0.11 8.8 83 1 1 0 5 2 2 0   8 1.54 3.53 16.4 -0.57 0.09 15.4 79 2 1 2 3 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.