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PDBsum entry 2v8p

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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2v8p calculated with MOLE 2.0 PDB id
2v8p
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.38 1.69 21.0 -1.81 -0.54 21.1 78 3 4 1 1 2 0 0  SO4 1271 A CL 1273 A
2 1.35 1.37 23.7 -1.68 -0.52 18.3 78 3 4 2 2 2 0 0  SO4 1271 A CL 1273 A
3 1.38 1.39 33.9 -1.82 -0.66 24.2 75 4 8 1 1 3 0 0  CL 1273 A SO4 1271 B
4 1.36 1.38 36.5 -1.73 -0.64 22.0 75 4 8 2 2 3 0 0  CL 1273 A SO4 1271 B
5 1.51 1.57 16.9 -0.19 -0.58 6.6 93 0 1 3 3 0 0 0  CDP 1269 A ADP 1270 A
6 1.21 3.48 22.1 1.38 0.35 4.8 84 0 1 3 8 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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