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PDBsum entry 2v6d

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Transport protein PDB id
2v6d
Contents
Protein chain
342 a.a.
Ligands
PDN
Waters ×174

References listed in PDB file
Key reference
Title Corticosteroid-Binding globulin, A structural basis for steroid transport and proteinase-Triggered release.
Authors M.A.Klieber, C.Underhill, G.L.Hammond, Y.A.Muller.
Ref. J Biol Chem, 2007, 282, 29594-29603. [DOI no: 10.1074/jbc.M705014200]
PubMed id 17644521
Note In the PDB file this reference is annotated as "TO BE PUBLISHED". The citation details given above were identified by an automated search of PubMed on title and author names, giving a percentage match of 94%.
Abstract
Corticosteroid-binding globulin (CBG) is a serine proteinase inhibitor (serpin) family member that transports glucocorticoids in blood and regulates their access to target cells. The 1.9A crystal structure of rat CBG shows that its steroid-binding site resembles the thyroxin-binding site in the related serpin, thyroxin-binding globulin, and mutagenesis studies have confirmed the contributions of key residues that constitute the steroid-binding pocket. Unlike thyroxin-bound thyroxin-binding globulin, the cortisol-bound CBG displays an "active" serpin conformation with the proteinase-sensitive, reactive center loop (RCL) fully expelled from the regulatory beta-sheet A. Moreover, the CBG structure allows us to predict that complete insertion of the proteolytically cleaved RCL into the serpin fold occurs in concert with a displacement and unwinding of helix D that would disrupt the steroid-binding site. This allosteric coupling between RCL positioning and occupancy of the CBG steroid-binding site, which resembles the ligand (glycosamino-glycan)-dependent activation of the thrombin inhibitory serpins heparin cofactor II and anti-thrombin RCLs, ensures both optimal recognition of CBG by target proteinases and efficient release of steroid to sites of action.
Figure 1.
FIGURE 1. Crystal structure of rat CBG. A and B, ribbon representation of rat CBG viewed from two different angles. Secondary structure elements are named according to the common serpin nomenclature. The -sheets A, B, and C are colored in red, green, and blue, respectively. The trace of the residues of the RCL not visible in electron density maps (residues 329-338) is modeled by a dashed line. The steroid (cortisol) is bound on top of sheet B and shown in yellow. C, close-up of cortisol in the steroid-binding site. D, representative portion of the final [A]-weighted 2F[o] - F[c] electron density map contoured at 1.0 and showing cortisol with the surrounding residues Arg^10 and Trp^362.
Figure 3.
FIGURE 3. Hormone binding to CBG. A, stereo representation of the CBG (blue) steroid-binding site. B, schematic depiction of the interactions between CBG and cortisol. Water molecules are shown as red dots, hydrophobic interactions are shown with dashed lines, and polar interactions are shown with dotted lines in A and B. C, for comparison, thyroxin-binding site in TBG (Protein Data Bank code 2ceo). Note that similar residues are involved in binding cortisol in CBG and thyroxin in TBG. D, mapping of three different serpin ligand-binding sites onto the CBG surface (in blue). Cortisol is shown in yellow, and thyroxin is in green, as bound to TBG. Heparin (in orange) binds on top of helix D in antithrombin (Protein Data Bank code 1e03) close to the shared ligand-binding site in TBG and CBG.
The above figures are reprinted by permission from the ASBMB: J Biol Chem (2007, 282, 29594-29603) copyright 2007.
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