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PDBsum entry 2v6a

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Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 2v6a calculated with MOLE 2.0 PDB id
2v6a
Pores calculated on whole structure Pores calculated excluding ligands

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29 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.46 1.87 25.2 -0.73 -0.25 15.5 75 1 4 0 2 4 0 0  EDO 1478 E EDO 1479 E EDO 1480 E EDO 1482 F
2 1.49 1.70 64.8 -1.31 -0.42 18.3 80 5 7 3 3 5 0 0  EDO 1478 A EDO 1479 A EDO 1480 A EDO 1484 A EDO
1481 B
3 1.73 1.80 111.0 -0.17 -0.18 18.5 91 6 17 7 17 0 1 0  SMC 369 D
4 1.69 1.79 113.8 -0.16 -0.19 18.1 91 7 16 7 16 0 1 0  SMC 369 C
5 1.69 1.76 113.1 -0.23 -0.19 19.2 91 7 17 7 18 0 1 0  SMC 369 E
6 1.69 1.83 131.7 -0.95 -0.26 26.8 88 14 19 5 19 0 2 0  SMC 369 C SMC 369 E
7 1.77 3.88 141.1 -0.71 -0.19 25.4 86 16 19 3 20 1 2 0  SMC 369 D SMC 369 E
8 1.61 1.77 141.5 -1.06 -0.27 27.3 85 16 20 3 18 1 2 0  SMC 369 C SMC 369 D
9 1.57 1.73 152.0 -1.14 -0.35 15.6 73 6 4 3 8 5 4 0  EDO 1478 G EDO 1479 G MME 1 P
10 1.69 1.73 159.2 -0.34 -0.23 18.4 89 8 19 10 20 2 1 0  SMC 369 B EDO 1478 G EDO 1479 G
11 1.62 1.79 175.3 -1.12 -0.32 25.9 86 15 22 6 20 3 2 0  SMC 369 B SMC 369 E EDO 1478 G EDO 1479 G
12 1.67 1.74 177.8 -0.94 -0.26 25.2 87 15 23 8 21 2 2 0  SMC 369 B SMC 369 C EDO 1478 G EDO 1479 G
13 1.51 2.85 187.3 -0.78 -0.22 24.1 86 17 25 6 22 3 2 0  SMC 369 B SMC 369 D EDO 1478 G EDO 1479 G
14 1.51 1.72 26.6 -0.64 -0.23 15.5 76 1 4 0 3 4 0 0  EDO 1481 G EDO 1479 H EDO 1480 H EDO 1481 H
15 2.04 2.19 50.1 -0.95 -0.32 24.2 89 1 4 3 7 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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