 |
PDBsum entry 2v4t
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 2v4t calculated with MOLE 2.0
|
PDB id
|
|
|
|
2v4t
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
2 pores,
coloured by radius |
 |
2 pores,
coloured by radius
|
2 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.99 |
2.07 |
43.9 |
-1.40 |
-0.59 |
15.7 |
68 |
 |
4 |
1 |
0 |
0 |
2 |
0 |
0 |
 |
DG 5 P DA 10 P DT 11 P DT 12 P DT 9 T DC 10 T DC 11 T DT 12 T DT 13 T
|
 |
 |
2 |
 |
2.89 |
2.89 |
84.6 |
-1.19 |
-0.27 |
20.2 |
88 |
9 |
2 |
3 |
4 |
1 |
0 |
0 |
DGT 594 A MG 1001 A DG 5 P DC 13 P DOC 14 P N2G 5 T DG 6 T DA 7 T DC 10 T
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |