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PDBsum entry 2v4a
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Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 2v4a calculated with MOLE 2.0 PDB id
2v4a
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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2 tunnels, coloured by tunnel radius 15 tunnels, coloured by tunnel radius 15 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.21 1.37 28.3 0.55 0.09 13.2 78 4 1 1 6 1 0 0  MSE 28 B MSE 167 B
2 1.19 1.20 30.7 0.28 0.00 14.7 78 4 1 2 9 1 0 0  MSE 28 B MSE 167 B
3 1.46 1.46 38.5 0.81 0.32 4.3 75 1 0 0 8 5 1 0  MSE 120 B MSE 165 B MSE 167 B MSE 211 B GOL 1251 C
4 1.14 1.14 42.0 0.76 0.30 4.2 76 1 0 1 11 5 1 0  MSE 120 B MSE 165 B MSE 167 B MSE 211 B GOL 1251
B GOL 1251 C
5 1.17 2.89 42.2 0.95 0.28 6.1 78 3 1 0 9 5 0 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B GOL 1251
C
6 1.46 1.47 44.5 0.57 0.24 4.6 75 1 1 0 9 6 1 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B MSE 120
C GOL 1251 C
7 1.19 1.16 45.7 0.93 0.28 5.8 79 3 1 1 12 5 0 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B GOL 1251
C
8 1.47 1.49 46.2 -0.42 0.05 11.3 69 2 0 1 6 6 1 0  MSE 120 B MSE 165 B MSE 167 B MSE 211 B GOL 1251
B GOL 1251 C
9 1.19 1.15 48.0 0.56 0.23 4.6 76 1 1 1 12 6 1 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B MSE 120
C GOL 1251 C
10 1.46 1.46 50.5 -0.50 -0.04 12.7 76 4 2 1 6 5 1 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B MSE 120
C GOL 1251 C
11 1.25 1.37 64.5 0.99 0.31 6.8 77 5 1 1 15 6 0 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B MSE 28 C
MSE 165 C MSE 167 C MSE 211 C GOL 1251 C
12 1.23 2.55 68.1 0.92 0.29 7.3 77 5 1 2 18 6 0 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B MSE 28 C
MSE 165 C MSE 167 C MSE 211 C GOL 1251 C
13 1.16 1.23 72.6 -0.75 -0.09 12.5 73 5 3 3 9 7 1 0  MSE 165 B MSE 167 B MSE 211 B GOL 1251 B MSE 120
C GOL 1251 C
14 1.20 1.33 19.7 0.27 0.21 20.4 84 4 1 1 6 0 0 0  MSE 28 A
15 1.61 3.02 23.4 2.30 0.62 1.0 81 0 0 0 11 3 0 0  MSE 165 A MSE 167 A MSE 211 A GOL 1251 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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