PDBsum entry 2uxd

Pore analysis for: 2uxd calculated with

MOLE 2.0

PDB id

2uxd

Pores calculated on whole structure

Pores calculated excluding ligands

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31 pores, coloured by radius

31 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

3.09

25.7

-0.40

-0.80

3.4

C 131 A C 132 A U 133 A A 134 A C 135 A C 136 A C
137 A G 138 A G 139 A A 140 A A 141 A C 218 A C
221 A U 222 A C 224 A C 225 A G 226 A G 227 A MG
3059 G

1.29

1.38

34.6

-0.94

-0.50

15.8

C 176 A C 177 A C 178 A A 179 A U 192 A C 193 A C
194 A A 195 A A 196 A

2.30

2.31

35.5

-1.12

-0.71

10.6

C 131 A C 132 A U 133 A A 134 A C 135 A C 175 A C
176 A C 177 A C 178 A U 222 A U 223 A C 224 A C
225 A G 226 A G 227 A A 325 A C 1459 A

1.44

53.5

-0.81

-0.71

9.2

C 131 A C 132 A U 133 A A 134 A C 135 A C 175 A C
176 A C 177 A C 178 A A 179 A U 192 A C 193 A C
194 A A 195 A A 196 A U 222 A U 223 A C 224 A C
225 A G 226 A G 227 A A 325 A

1.61

1.67

54.6

-1.19

-0.65

12.8

A 134 A C 135 A C 136 A C 137 A G 138 A G 139 A A
140 A A 141 A C 175 A C 176 A C 177 A C 178 A C
218 A C 221 A U 222 A U 223 A C 224 A A 325 A C
1459 A MG 3059 G

1.56

1.65

56.2

-1.24

-0.59

14.7

C 747 A U 827 A A 828 A G 829 A U 839 A U 850 A G
851 A C 857 A G 858 A A 859 A

1.46

1.45

58.5

-0.78

-0.73

8.6

A 134 A C 135 A C 136 A C 137 A G 138 A G 139 A A
140 A A 141 A C 175 A C 176 A C 177 A C 178 A A
179 A U 192 A C 193 A C 194 A A 195 A A 196 A C
218 A C 221 A U 222 A U 223 A C 224 A A 325 A MG
3059 G

1.20

1.31

61.4

-1.34

-0.50

13.6

C 857 A G 858 A A 859 A A 860 A G 1072 A U 1073 A
G 1074 A C 1075 A C 1076 A G 1077 A U 1078 A MG
3030 G

1.54

2.47

80.7

-1.84

-0.62

19.9

G 654 A A 655 A C 656 A G 657 A G 658 A G 661 A G
662 A A 663 A G 664 A U 743 A C 744 A C 745 A A
746 A C 747 A C 748 A U 839 A U 850 A G 851 A

1.90

1.92

82.5

-0.62

-0.74

6.8

A 120 A G 122 A U 129 A C 131 A C 132 A U 133 A A
134 A C 224 A C 225 A G 226 A G 227 A C 233 A G
251 A U 252 A U 261 A A 262 A A 263 A G 265 A C
267 A C 268 A C 269 A A 313 A C 314 A G 319 A C
320 A C 322 A U 323 A G 324 A A 325 A G 326 A A
327 A C 328 A C 1426 A U 1427 A A 1428 A C 1466 A
G 1467 A A 1468 A MG 3033 G

2.80

82.8

-0.58

-0.79

5.2

G 64 A U 65 A G 69 A G 70 A C 73 A C 89 A U 90 A
C 92 A G 93 A G 96 A U 98 A G 138 A G 139 A A 140
A A 141 A C 201 A U 202 A C 218 A C 219 A C 221 A
C 381 A A 382 A C 456 A C 461 A

3.39

83.6

-1.04

-0.74

10.5

G 654 A A 655 A C 656 A G 657 A G 658 A G 661 A G
662 A A 663 A G 664 A A 665 A G 667 A G 668 A U
669 A G 670 A G 671 A U 672 A G 714 A A 715 A A
716 A A 733 A G 734 A C 735 A C 736 A A 737 A C
738 A C 739 A U 740 A U 743 A C 744 A C 745 A A
746 A C 747 A C 748 A C 806 A U 839 A U 850 A G
851 A

2.35

104.4

-0.18

-0.65

4.2

A 120 A G 122 A G 148 A A 149 A C 150 A U 164 A C
165 A G 166 A C 176 A C 177 A C 178 A G 251 A U
252 A G 265 A C 267 A C 268 A C 269 A A 313 A C
314 A A 315 A G 316 A G 318 A G 319 A C 320 A C
328 A A 329 A G 333 A C 334 A C 335 A G 348 A A
349 A G 350 A G 351 A C 1426 A U 1427 A A 1428 A
G 1435 A C 1459 A A 1460 A G 1461 A C 1466 A G
1467 A A 1468 A

2.44

2.65

106.8

-0.45

-0.67

6.0

C 58 A G 61 A U 62 A C 63 A G 64 A G 69 A G 70 A
C 73 A C 89 A U 90 A C 92 A G 93 A G 96 A G 97 A
U 98 A C 99 A A 101 A G 102 A G 148 A A 149 A C
150 A A 151 A A 152 A C 163 A U 164 A C 165 A G
166 A C 176 A C 177 A C 178 A C 385 A C 386 A C
1459 A

3.02

118.4

-0.55

-0.77

4.7

A 665 A U 669 A G 670 A G 671 A U 672 A G 714 A A
715 A A 716 A C 717 A U 723 A G 724 A C 732 A A
733 A C 806 A G 818 A A 819 A G 855 A C 856 A C
857 A G 858 A A 859 A A 860 A C 866 A G 867 A C
868 A A 919 A U 920 A C 1076 A G 1077 A G 1082 A
U 1391 A G 1392 A G 1525 A G 1526 A C 1527 A U
1528 A G 1529 A MG 3002 G

3.19

133.6

-1.56

-0.67

16.4

C 245 A G 247 A C 248 A U 249 A A 250 A G 251 A U
252 A C 269 A A 270 A G 284 A G 670 A G 763 A G
774 A C 806 A A 807 A C 808 A G 809 A C 810 A U
1425 A C 1426 A U 1427 A A 1428 A C 1466 A G 1467
A G 1476 A K 3076 G

1.94

1.95

139.6

-0.73

-0.75

7.8

U 118 A A 119 A A 120 A C 121 A G 122 A U 129 A C
131 A C 132 A U 133 A A 134 A C 224 A C 225 A G
226 A G 227 A C 233 A C 240 A C 241 A C 242 A A
243 A U 244 A U 252 A U 261 A A 262 A A 263 A G
265 A C 267 A C 268 A C 277 A G 278 A G 281 A A
282 A C 283 A A 313 A C 314 A G 319 A C 320 A C
322 A U 323 A G 324 A A 325 A G 326 A A 327 A C
328 A G 670 A G 760 A G 761 A C 762 A G 763 A G
765 A G 774 A C 806 A A 807 A C 808 A G 809 A C
810 A C 811 A C 812 A C 882 A G 895 A C 896 A C
897 A G 903 A C 904 A U 905 A G 906 A MG 3033 G

2.24

141.9

-0.48

-0.67

5.4

G 654 A A 655 A A 665 A U 677 A U 678 A G 691 A C
719 A G 721 A A 722 A U 723 A G 724 A G 727 A A
728 A A 729 A G 731 A C 732 A A 733 A U 743 A C
744 A C 745 A A 746 A C 747 A C 748 A G 778 A C
779 A A 780 A A 781 A C 783 A C 784 A G 785 A A
792 A U 793 A A 794 A C 795 A C 797 A G 798 A G
799 A G 800 A G 818 A C 822 A G 823 A C 824 A U
839 A U 850 A G 851 A G 852 A G 853 A G 854 A G
855 A C 1527 A MG 3018 G MG 3040 G MG 3056 G

2.19

141.5

-0.62

-0.57

6.9

A 675 A A 676 A U 677 A G 691 A C 707 A C 708 A G
709 A C 719 A A 722 A U 723 A G 724 A G 818 A A
819 A G 855 A C 856 A C 857 A G 858 A A 859 A A
860 A C 866 A G 867 A C 868 A A 919 A U 920 A C
1076 A G 1077 A G 1082 A U 1391 A G 1392 A C 1527
A U 1528 A G 1529 A MG 3002 G

2.24

142.4

-0.63

-0.78

6.4

A 119 A A 120 A C 121 A C 240 A C 241 A C 242 A A
243 A U 244 A G 251 A U 252 A C 269 A A 270 A C
277 A G 278 A G 281 A A 282 A C 283 A G 284 A G
319 A G 576 A G 577 A C 578 A G 579 A U 580 A G
654 A A 655 A C 656 A U 743 A C 744 A C 745 A A
746 A C 747 A C 748 A U 757 A G 758 A G 760 A C
822 A G 823 A C 824 A U 850 A G 851 A G 852 A C
882 A C 904 A U 905 A G 906 A C 1426 A U 1427 A A
1428 A C 1466 A G 1467 A A 1468 A K 3073 G

2.73

166.1

-0.56

-0.68

7.6

U 12 A U 13 A U 14 A G 15 A A 16 A G 505 A G 506
A G 527 A C 528 A G 654 A A 655 A G 724 A G 727 A
A 728 A A 729 A G 731 A U 743 A C 744 A C 745 A A
746 A C 747 A C 748 A G 818 A A 819 A C 822 A G
823 A C 824 A U 839 A U 850 A G 851 A G 852 A G
853 A G 854 A G 855 A C 856 A C 866 A G 867 A C
868 A G 886 A G 887 A A 914 A A 915 A G 916 A G
917 A A 918 A A 919 A G 1072 A U 1073 A U 1393 A
A 1394 A C 1403 A C 1404 A C 1490 A C 1509 A U
1510 A U 1528 A G 1529 A G 1530 A PAR 3001 A MG
3023 G MG 3068 G DG 4 X

2.56

169.0

-0.53

-0.79

4.5

G 52 A A 53 A C 54 A A 55 A U 56 A G 57 A C 58 A
G 61 A U 62 A C 63 A G 64 A G 69 A G 70 A C 73 A
U 90 A C 91 A C 92 A G 93 A G 96 A G 97 A U 98 A
C 99 A A 101 A A 116 A G 117 A U 118 A A 119 A C
154 A C 169 A G 251 A U 252 A C 269 A G 317 A G
318 A G 319 A A 338 A C 339 A U 340 A C 341 A C
342 A U 359 A C 385 A C 386 A C 1424 A U 1425 A C
1426 A U 1427 A A 1428 A C 1466 A G 1467 A A 1468
A

2.02

2.01

177.4

-1.06

-0.72

11.4

A 119 A A 120 A C 121 A C 240 A C 241 A C 242 A A
243 A U 244 A G 251 A U 252 A C 269 A A 270 A C
277 A G 278 A G 281 A A 282 A C 283 A G 284 A G
319 A G 664 A A 665 A G 667 A G 668 A U 669 A G
670 A C 732 A A 733 A G 734 A C 735 A C 736 A A
737 A C 738 A C 739 A U 740 A G 760 A G 761 A C
762 A G 763 A C 764 A G 765 A A 766 A A 767 A C
806 A A 807 A C 808 A G 809 A C 810 A C 811 A C
812 A C 882 A G 895 A C 896 A C 897 A G 903 A C
904 A U 905 A G 906 A C 1426 A U 1427 A A 1428 A
C 1466 A G 1467 A A 1468 A MG 3062 G

1.74

1.77

180.4

-0.70

-0.76

7.2

G 117 A U 118 A A 119 A C 242 A G 251 A U 252 A C
269 A A 270 A G 286 A U 287 A G 318 A G 319 A A
573 A A 574 A A 780 A A 781 A C 783 A C 784 A G
785 A A 792 A U 793 A A 794 A C 795 A C 796 A C
797 A G 798 A G 799 A U 884 A G 885 A G 886 A G
887 A G 888 A A 889 A G 890 A A 907 A A 908 A G
1405 A G 1423 A C 1424 A U 1425 A C 1426 A U 1427
A A 1428 A C 1466 A G 1467 A A 1468 A C 1478 A C
1479 A U 1506 A G 1508 A C 1509 A U 1510 A G 1511
A U 1512 A G 1520 A G 1521 A U 1522 A G 1523 A MG
3040 G MG 3064 G

2.94

2.96

180.4

-0.60

-0.65

8.1

U 12 A U 13 A U 14 A G 15 A A 16 A G 117 A U 118
A A 119 A C 242 A G 251 A U 252 A C 269 A A 270 A
G 286 A U 287 A G 318 A G 319 A G 505 A G 506 A G
527 A C 528 A A 573 A A 574 A U 884 A G 885 A G
886 A G 887 A G 888 A A 889 A G 890 A A 907 A A
908 A A 914 A A 915 A G 916 A G 1072 A U 1073 A C
1403 A C 1404 A G 1423 A C 1424 A U 1425 A C 1426
A U 1427 A A 1428 A C 1466 A G 1467 A A 1468 A C
1478 A C 1479 A C 1490 A U 1510 A PAR 3001 A MG
3023 G MG 3068 G DG 4 X

2.94

2.96

182.6

-0.57

-0.76

5.2

G 117 A U 118 A A 119 A C 242 A G 251 A U 252 A C
269 A A 270 A G 286 A U 287 A G 318 A G 319 A A
572 A A 573 A A 574 A C 857 A G 858 A A 859 A A
860 A C 866 A G 867 A U 884 A G 885 A G 886 A G
887 A G 888 A A 889 A G 890 A A 907 A A 908 A G
916 A G 917 A A 918 A A 919 A U 920 A C 1076 A G
1077 A G 1082 A U 1391 A G 1392 A U 1393 A A 1394
A G 1423 A C 1424 A U 1425 A C 1426 A U 1427 A A
1428 A C 1466 A G 1467 A A 1468 A C 1478 A C 1479
A C 1509 A U 1510 A G 1529 A G 1530 A MG 3002 G
MG 3068 G

1.73

215.5

-1.13

-0.73

12.6

U 5 A G 6 A G 29 A U 30 A G 44 A U 45 A C 58 A A
59 A U 62 A C 63 A G 64 A G 69 A G 70 A C 73 A U
90 A C 91 A C 92 A G 93 A G 96 A G 97 A U 98 A C
99 A C 154 A C 169 A C 295 A U 296 A G 297 A G
299 A A 300 A G 306 A C 307 A C 308 A C 355 A A
356 A C 369 A C 370 A G 371 A C 372 A C 385 A C
386 A U 387 A G 388 A C 390 A G 391 A G 392 A A
393 A C 400 A U 565 A G 566 A A 611 A C 612 A C
623 A C 624 A G 630 A C 857 A G 858 A A 859 A A
860 A G 861 A C 862 A G 1077 A U 1078 A MG 3007 G
K 3074 G

2.54

221.6

-0.66

-0.77

6.3

G 52 A A 53 A C 54 A A 55 A U 56 A G 57 A C 58 A
G 61 A U 62 A C 63 A G 64 A G 69 A G 70 A C 73 A
U 90 A C 91 A C 92 A G 93 A G 96 A G 97 A U 98 A
C 99 A A 101 A A 116 A G 117 A C 154 A C 169 A C
242 A A 243 A U 244 A G 286 A U 287 A G 317 A A
338 A C 339 A U 340 A C 341 A C 342 A U 359 A C
385 A C 386 A G 670 A G 760 A G 761 A C 762 A G
763 A G 765 A G 774 A C 806 A A 807 A C 808 A G
809 A C 810 A C 811 A C 812 A C 882 A C 883 A G
895 A C 896 A C 897 A G 903 A C 904 A U 905 A G
906 A A 907 A A 908 A G 1423 A C 1424 A C 1478 A
C 1479 A

1.75

229.2

-0.46

-0.69

6.9

U 5 A G 6 A G 29 A U 30 A G 44 A U 45 A C 58 A A
59 A U 62 A C 63 A G 64 A G 69 A G 70 A C 73 A U
90 A C 91 A C 92 A G 93 A G 96 A G 97 A U 98 A C
99 A C 154 A C 169 A C 295 A U 296 A G 297 A G
299 A A 300 A G 306 A C 307 A C 308 A C 355 A A
356 A C 369 A C 370 A G 371 A C 372 A C 385 A C
386 A U 387 A G 388 A C 390 A G 391 A G 392 A A
393 A C 400 A U 565 A G 567 A G 568 A C 569 A A
611 A C 612 A C 623 A C 624 A G 630 A G 654 A A
746 A C 747 A C 748 A G 821 A C 822 A G 823 A C
824 A G 825 A C 826 A U 850 A G 851 A G 852 A U
870 A U 871 A A 872 A A 873 A G 874 A G 876 A C
877 A MG 3007 G MG 3043 G K 3074 G

2.29

282.6

-0.64

-0.75

6.1

U 14 A G 117 A U 118 A A 119 A C 242 A G 251 A U
252 A C 269 A A 270 A G 286 A U 287 A G 318 A G
319 A A 573 A A 574 A U 884 A G 885 A G 886 A G
887 A G 888 A A 889 A G 890 A A 907 A A 908 A A
915 A G 916 A G 933 A C 934 A A 935 A G 966 A C
967 A A 968 A C 1063 A U 1065 A A 1111 A C 1112 A
C 1113 A C 1114 A C 1115 A C 1116 A G 1117 A C
1118 A C 1119 A G 1127 A U 1150 A A 1151 A C 1153
A G 1154 A G 1156 A A 1183 A G 1184 A G 1185 A G
1186 A G 1187 A U 1194 A C 1195 A U 1196 A A 1250
A A 1251 A A 1252 A G 1253 A A 1280 A U 1281 A C
1284 A A 1286 A C 1344 A G 1385 A G 1386 A A 1396
A C 1397 A A 1398 A C 1399 A C 1400 A C 1402 A C
1403 A C 1404 A G 1423 A C 1424 A U 1425 A C 1426
A U 1427 A A 1428 A C 1466 A G 1467 A A 1468 A C
1478 A C 1479 A C 1490 A U 1510 A PAR 3001 A MG
3028 G MG 3068 G DC 1 X DG 2 X DG 3 X DG 4 X

1.19

2.08

28.5

0.43

0.14

15.1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.