PDBsum entry 2uxd Go to PDB code:  Tunnel analysis for: 2uxd calculated with MOLE 2.0 PDB id 2uxd Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.30 41.2 -0.38 -0.40 8.1 83 3 0 1 1 1 1 0  C 962 A G 963 A G 973 A C 1051 A U 1052 A C 1060 A G 1198 A U 1199 A C 1200 A A 1201 A G 1202 A C 34 Y 2 1.24 1.29 55.7 -1.06 -0.48 13.4 84 7 0 1 3 2 1 0  G 973 A A 974 A G 976 A A 977 A C 980 A U 981 A U 982 A U 1049 A C 1060 A G 1198 A U 1199 A A 1201 A G 1202 A U 1257 A C 1359 A A 1360 A MG 3032 G 3 1.24 1.29 60.2 -0.92 -0.35 16.0 83 8 0 1 5 1 1 0  G 973 A A 974 A U 982 A A 996 A A 1046 A G 1047 A G 1048 A U 1049 A C 1060 A G 1198 A U 1199 A A 1201 A G 1202 A A 1204 A U 1205 A 4 1.23 1.23 81.7 -1.32 -0.49 15.7 83 8 0 1 2 2 2 0  U 950 A G 951 A G 973 A A 974 A A 977 A U 981 A U 982 A U 1049 A C 1060 A G 1198 A U 1199 A A 1201 A G 1202 A G 1224 A A 1225 A C 1322 A A 1363 A i: A C 1363 A 5 1.15 1.81 17.2 0.73 0.09 8.7 82 1 1 1 4 0 0 0   6 1.14 1.80 21.2 0.36 0.11 15.6 77 2 2 0 5 1 0 0   7 1.22 1.22 16.4 -1.35 -0.73 17.0 73 3 1 0 0 1 0 0  G 128 A U 129 A A 130 A C 234 A C 235 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.