PDBsum entry 2tsr Go to PDB code:  Tunnel analysis for: 2tsr calculated with MOLE 2.0 PDB id 2tsr Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.42 3.59 18.2 -0.89 0.19 13.1 65 1 1 2 5 5 0 0  UMP 308 A D16 309 A 2 1.35 3.37 24.1 -0.23 0.40 9.6 70 1 1 3 5 5 0 0  UMP 608 D D16 609 D 3 1.33 3.37 25.9 -0.68 0.28 13.7 70 2 2 3 4 5 0 1  UMP 608 D D16 609 D 4 1.18 1.59 21.6 0.28 0.30 11.2 81 2 2 2 2 3 0 0   5 1.82 2.50 17.6 -2.18 -0.22 30.9 62 2 2 0 1 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.