PDBsum entry 2rje

Pore analysis for: 2rje calculated with

MOLE 2.0

PDB id

2rje

Pores calculated on whole structure

Pores calculated excluding ligands

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12 pores, coloured by radius

12 pores, coloured by radius

12 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.62

1.81

29.2

-0.95

-0.52

7.7

79

1

2

3

3

0

3

0

2

2.63

2.78

29.5

-2.30

-0.46

28.6

88

4

3

4

2

1

1

0

3

2.50

2.70

32.9

-2.06

-0.46

23.2

84

5

3

4

2

1

2

0

4

1.23

1.23

37.1

-1.23

-0.38

8.6

68

1

2

2

2

2

0

1

5

1.46

1.47

40.2

-2.09

-0.48

20.9

74

5

5

1

2

2

1

0

6

2.01

3.03

40.1

-0.11

-0.30

6.5

80

2

3

5

5

0

3

0

MLY 20 Q

7

2.72

2.88

43.9

-1.01

-0.29

6.9

64

1

0

4

3

2

4

1

8

2.03

2.17

47.5

0.01

-0.24

7.2

78

3

3

4

5

0

4

0

9

1.23

1.22

50.7

-2.13

-0.49

21.3

75

5

3

2

0

2

1

1

10

2.01

2.19

51.1

0.02

-0.10

8.4

78

2

2

2

5

0

4

0

11

2.01

2.29

56.6

-0.08

-0.07

9.8

79

3

2

3

6

0

4

0

MLY 20 Q

12

2.28

2.40

162.2

-1.76

-0.37

19.4

79

13

4

11

7

3

7

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.