PDBsum entry 2rd0

Pore analysis for: 2rd0 calculated with

MOLE 2.0

PDB id

2rd0

Pores calculated on whole structure

Pores calculated excluding ligands

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16 pores, coloured by radius

16 pores, coloured by radius

16 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.51

3.25

29.5

-2.76

-0.68

26.6

90

4

3

6

1

1

0

0

2

1.32

1.32

30.9

0.78

0.42

9.7

75

3

1

1

6

4

0

0

3

1.49

1.75

42.8

-1.58

-0.59

13.9

79

4

2

4

3

0

4

0

4

1.18

2.84

44.1

0.76

0.40

7.3

80

2

2

1

7

4

0

0

5

1.34

1.35

57.9

-1.35

-0.39

12.6

72

3

3

5

3

4

3

1

6

1.34

2.80

59.4

-2.06

-0.21

21.2

80

6

4

6

5

3

3

0

7

1.52

1.73

67.8

-1.55

-0.41

20.8

72

6

6

3

5

3

2

1

8

1.32

1.34

69.9

-2.18

-0.62

26.9

75

5

6

4

4

2

1

0

9

1.24

2.84

70.5

-2.21

-0.29

24.2

84

8

4

10

6

1

4

0

10

1.56

1.77

79.7

-2.11

-0.67

24.5

80

10

8

5

3

1

2

0

11

2.06

2.65

78.6

-1.72

-0.37

30.7

77

6

10

1

4

1

1

1

12

2.11

5.07

86.8

-2.50

-0.65

33.6

79

11

16

5

4

1

2

1

13

2.87

3.12

95.5

-2.14

-0.48

28.9

81

11

15

6

7

0

4

1

14

1.37

1.72

161.7

-2.42

-0.56

27.8

86

16

14

11

6

2

2

0

15

1.43

1.82

187.3

-2.26

-0.52

25.8

87

17

15

16

9

2

2

1

16

1.21

1.45

193.2

-2.17

-0.43

27.8

85

21

16

13

9

1

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.