spacer
spacer

PDBsum entry 2qqh

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 2qqh calculated with MOLE 2.0 PDB id
2qqh
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.29 1.48 19.9 -0.57 -0.05 17.1 85 2 1 1 4 1 0 0  SO4 466 A
2 1.28 1.52 20.4 -0.57 0.07 14.9 81 1 1 1 3 2 0 0  SO4 466 A
3 1.11 1.21 22.0 -1.10 0.11 16.0 79 3 2 1 3 2 1 0  
4 1.21 2.03 19.7 1.80 0.67 0.9 79 0 0 3 6 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer